| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0961 |
|---|
| Symbol | infB |
|---|
| ID | 4603213 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 1161111 |
|---|
| End bp | 1163759 |
|---|
| Gene Length | 2649 bp |
|---|
| Protein Length | 882 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639780300 |
|---|
| Product | translation initiation factor IF-2 |
|---|
| Protein accession | YP_926838 |
|---|
| Protein GI | 119774098 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0532] Translation initiation factor 2 (IF-2; GTPase) |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00487] translation initiation factor IF-2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.875845 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.117843 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGAAA TTACGGTAGA GAAACTAGCC ACAGAAGTCG GTAAAACTGT TGACAGACTT
ATTGAACAGT TTGCCCAGGC CGGTATCAAG AAGGCCAAAG CTGACACTGT GTCTGAATCA
GAAAAGCAGC AACTGCTGGA CTTTTTGAAG AAGCAACACG GCGCTGACGC CCAGCCAACC
AAGATGACAC TCCAGCGTAA GACTGTGTCT ACGCTTAGCG TGTCCAGCGG TGGTGGACAG
TCTAAAGACG TGAAAGTGGA AGTGCGCAAG AAGCGTACTT TCGTGAAGCG TGACGGTAAC
GAAGCAGCCC TGAAGGCTGA AGAAGAAGCC CGTGCTCAAG CCGAAGCCCA GGCAAAAGCC
GAAGCCGAAG CCAAGGCTAA AGCTGAGGCC GAAGCCAAGG CAAAAGCAGA CGCAGAAGCC
AAGGCAAAAG CCAAGGCTGA AGCCGAAGCC AAAGCAAAAG CCAGCGCCAG TGCTGCCAAA
GAGCAACCAA AGCCAGTTGA GTCAGAAGAA GCCAAGGCTG AAGCTGCTCG CCTGAAGTCG
CAGCAGGAAG AAGCTGCCAA GAGCAAGGCT GCCCAGGAAG AAGCCGCTGC CAAAGAAAAG
GCGCGTCTGT TGGCTGAAGA AAACGCCGCT CGTTGGGCTG AAGAAGAGCG TCGTCGTATC
GAGGCTGAGC GTTATGGCGA TCACCATGTA ACCACTTCCA AGGTAGCCCG TGCCGCTGAA
GACAGTGCCG ACCTGGATGA TGAAAAACGC GGCCGTCGCA ACCGTAACAA GACTCAGACC
AAGAGCAAGC GTGGTGGTAA AGACGCTCGC GAAGGTCGTG AGAAGCACAT GAAATACAAG
AGCACTCCCG AGTCCATGGC ACACGGCTTT AACAAGCCAG TGGCCGCTGT GACCCGTGAT
GTGCGCATTG GTGAGACTGT GACTGTGGCC GAGCTGGCGC AGAAGATGGC AGTCAAGGCC
ACCGAAATCA TCAAAGCCAT GATGAAGATG GGCTCCATGG TAACCATCAA CCAGGTACTG
GATCAGGAAA CTGCCCAACT GGTTGCTGAG GAAATGGGTC ACAAGGTTGT ACTGCTGCGT
GAAAACGAGC TGGAGCATCA GGTTCTGGCA GATCGTGACG ATGAAGGTAC CACCAAGCTT
GAGCCTCGCG CTCCTGTGGT AACCATCATG GGTCACGTTG ACCACGGTAA GACCTCGCTG
CTCGACTACA TCCGTCGCAC CAAGGTTGCG GCTGGTGAAG CCGGTGGTAT TACGCAGCAC
ATCGGTGCCT ACCACGTAGA AACCGATAAC GGCATGATCA CCTTCCTGGA TACCCCTGGT
CACGCGGCCT TTACCGCAAT GCGTGCCCGT GGTGCCAAGG CAACTGACAT CGTTATTCTG
GTTGTGGCCG CCGACGACGG CGTAATGCCA CAGACCATCG AAGCTATCCA GCACGCCAAG
GCCGGTAATG TGCCTTTGAT TGTGGCTGTG AACAAGATGG ACAAGCCAGA AGCCGATATC
GACCGCGTGA AGAACGAACT GTCTCAGCAT GGCGTAATGT CAGAAGACTG GGGCGGAGAG
AACATGTTCT GTTACGTGTC TGCCAAGACT GGTCAGGGCG TTGATGAACT GCTGGAAGCT
ATCCTGCTTC AGGCTGAAGT TCTCGAACTC AAAGCTGTCC GCGATGGTAT GGCGGCTGGT
GTGGTTATCG AATCTCAGCT CGACAAGGGC CGTGGTCCGG TAGCGACCGT TCTGGTTCAG
GAAGGTACGT TGCGTCAGGG CGACATCGTT CTGTGTGGTC TCGAGTACGG TAAGATCCGT
GCCATGAAAG ATGAAAACGG TCGCCCAATT ATGGAAGCCG GTCCATCTAT TCCTGTGGAG
ATTCTCGGTC TGTCAGGTGT GCCTTCTGCC GGTGACGAAG CGACTGTGGT GCGTGACGAG
CGTAAAGCCC GTGAAGTGGC CCTGTACCGT CAAGGCAAGT TCCGTGATGT GAAGCTGGCG
CGTCAGCAAA AGTCCAAGCT CGAGAACATG TTTGCCAACA TGACCGAAGG CGAAGTGCAG
GAACTCAACA TCGTGCTCAA GGCCGACGTA CAGGGTTCTC TGGAAGCCAT TACCGACTCG
CTGCGTAAGC TGTCTACCGA TGAAGTGAAG GTGAACATCA TTGCTTCCGG TGTAGGTGCA
CTGACCGAAA CCGACGCGAC TCTGGCTGCA GCCTCCAACG CCATCATGGT TGGCTTTAAC
GTACGTGCCG ACGCCCAGGC CCGTAAGACC ATTGAATCTG AAGCCGTTGA TCTGCGTTAC
TACAGCGTGA TCTACGACCT GATTGACGAA GTGAAGTCTG CCATGAGCGG TATGCTGTCA
CCTGAGTTCA AGCAGCAGAT CATTGGTCTG GCCGAAGTGC GTGACGTGTT CAAGTCGCCT
AAGCTTGGCG CTATCGCCGG CTGTATGGTG ATTGAAGGTA TCGTGAAGCG CAGCGCGCCA
ATCCGTGTAC TGCGTGAGAA CGTGGTAATC TACGAAGGTG AGCTGGAGTC TCTGCGCCGC
TTTAAGGACG ACGTGAACGA AGTCCGCAAC GGCATGGAGT GTGGTATCGG CGTTAAGAAC
TACAATGATG TTCGCGTAGG CGATCAAATT GAAGTGTTCG AAACTATCGA AGTCGCACGA
ACACTCTAA
|
|---|
| Protein sequence | MTEITVEKLA TEVGKTVDRL IEQFAQAGIK KAKADTVSES EKQQLLDFLK KQHGADAQPT
KMTLQRKTVS TLSVSSGGGQ SKDVKVEVRK KRTFVKRDGN EAALKAEEEA RAQAEAQAKA
EAEAKAKAEA EAKAKADAEA KAKAKAEAEA KAKASASAAK EQPKPVESEE AKAEAARLKS
QQEEAAKSKA AQEEAAAKEK ARLLAEENAA RWAEEERRRI EAERYGDHHV TTSKVARAAE
DSADLDDEKR GRRNRNKTQT KSKRGGKDAR EGREKHMKYK STPESMAHGF NKPVAAVTRD
VRIGETVTVA ELAQKMAVKA TEIIKAMMKM GSMVTINQVL DQETAQLVAE EMGHKVVLLR
ENELEHQVLA DRDDEGTTKL EPRAPVVTIM GHVDHGKTSL LDYIRRTKVA AGEAGGITQH
IGAYHVETDN GMITFLDTPG HAAFTAMRAR GAKATDIVIL VVAADDGVMP QTIEAIQHAK
AGNVPLIVAV NKMDKPEADI DRVKNELSQH GVMSEDWGGE NMFCYVSAKT GQGVDELLEA
ILLQAEVLEL KAVRDGMAAG VVIESQLDKG RGPVATVLVQ EGTLRQGDIV LCGLEYGKIR
AMKDENGRPI MEAGPSIPVE ILGLSGVPSA GDEATVVRDE RKAREVALYR QGKFRDVKLA
RQQKSKLENM FANMTEGEVQ ELNIVLKADV QGSLEAITDS LRKLSTDEVK VNIIASGVGA
LTETDATLAA ASNAIMVGFN VRADAQARKT IESEAVDLRY YSVIYDLIDE VKSAMSGMLS
PEFKQQIIGL AEVRDVFKSP KLGAIAGCMV IEGIVKRSAP IRVLRENVVI YEGELESLRR
FKDDVNEVRN GMECGIGVKN YNDVRVGDQI EVFETIEVAR TL
|
|---|
| |