| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0960 |
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| Symbol | nusA |
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| ID | 4603212 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1159587 |
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| End bp | 1161086 |
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| Gene Length | 1500 bp |
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| Protein Length | 499 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639780299 |
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| Product | transcription elongation factor NusA |
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| Protein accession | YP_926837 |
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| Protein GI | 119774097 |
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| COG category | [K] Transcription |
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| COG ID | [COG0195] Transcription elongation factor |
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| TIGRFAM ID | [TIGR01953] transcription termination factor NusA
[TIGR01954] transcription termination factor NusA, C-terminal duplication |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.285563 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.179607 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAAAG AGATTCTGCT GGTCGCTGAG GCGGTTTCAA ACGAGAAAGC CGTTCCGCGT
GAAAAGATTT TCGAGGCGTT GGAGACAGCT CTGGCCACGG CAACCAAGAA AAAGTACGAA
GGTGATATCG ACGTTCGTGT AGCCATCGAT CGCAAGACCG GTGACTATGA AACCTTCCGT
CGCTGGATGG TGGTAGAGGA TAACGGCGAA GCGCTGGAAA ATCCTTACCG TGAGATCACC
CTCGAAGCCG CCCAATATGA AAATCCTGAA ATCCAGGTGG GCGAGTTTAT TGAGGACGAA
ATCGAGTCTG TGGTTTTCGA CCGTATCACT ACCCAAACTG CCAAGCAGGT TATCGTGCAA
AAAGTGCGCG AAGCCGAACG TGCTCAGGTT GTTGAACAGT TTTACGACAA AGAAGGCGAA
ATCATCACTG GCGTGGTGAA GAAGAGCAAT CGTGACAGTG TCATTGTGGA TTTGGGCAAC
AACGCCGACG GCGTGCTGTA CAAAGAAGAC CTGATTGCCC GCGAATCTTT CCGTCCAGGC
GATCGCGTTC GCGCACTGCT CTATGCTGTG CGTCCTGAGG CCCGCGGTGC TCAGTTGTAC
CTGACCCGTA CCAAGCCTGA AATGCTGATT GAGCTCTTCC GTGTGGAAGT GCCTGAAATC
GCAGATGAGA TGATCCAGGT GATGGGTGCT GCCCGTGATC CAGGCAGCCG CGCCAAGATT
GCTGTGAAGT CTAACGACCG TCGCATCGAT CCTATCGGCG CCTGTGTGGG TATGCGTGGT
GCCCGTGTTC AGGCCGTGTC CAACGAACTC GGTGGTGAGC GCGTGGATAT CGTGCTGTGG
GACGATAACC CAGCGCAATT CGTGATCAAC GCCATGGCGC CAGCCGATGT GGCTTCTATC
ATCGTGGATG AAGATAACCA CTCTATGGAC ATCGCCGTGG AAGCTGATTC TCTGGCCCAG
GCTATTGGCC GTAATGGTCA GAACGTGCGT TTGGCCACTC AACTGACCGG TTGGGAGTTG
AACGTGATGA CAGTGGCAGA CATGAATGCC AAGCACCAGG CAGAAAGTGC CAAGGTGGTT
GCGCTGTTTA TGGCGTCACT GGATGTAGAT GAAGATTTTG CTCAGGTGCT GGCCGATGAA
GGCTTCACCT CACTGGAAGA AGTGGCTTAT GTACCGGTTG CCGAACTCTT GGCAATCGAT
GGCTTCGACG AGGACATCGT TGAAGCGCTG CGTGAGCGCG CCAAAGCGGC CATTTCTACC
CGTGCGTTGG CGTCTGAAGA AGCGCTGGAC GGTGCAGAGC CGAGTGAAGA ATTGCTGAAT
CTTGAAGGCA TGGATCGCCA CCTCGCGTTT GTACTTGCAA GCCGTGGTGT AGTGACGCTG
GAAGATTTGG CCGAACAAGG CATTGATGAT TTGATCGAAA TAGAAGAATT GACAGAAGAG
AAAGCCGGTG CGCTGATCAT GGCTGCCCGT AACATCTGTT GGTTTGGCGA AGAGTCTTAA
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| Protein sequence | MNKEILLVAE AVSNEKAVPR EKIFEALETA LATATKKKYE GDIDVRVAID RKTGDYETFR
RWMVVEDNGE ALENPYREIT LEAAQYENPE IQVGEFIEDE IESVVFDRIT TQTAKQVIVQ
KVREAERAQV VEQFYDKEGE IITGVVKKSN RDSVIVDLGN NADGVLYKED LIARESFRPG
DRVRALLYAV RPEARGAQLY LTRTKPEMLI ELFRVEVPEI ADEMIQVMGA ARDPGSRAKI
AVKSNDRRID PIGACVGMRG ARVQAVSNEL GGERVDIVLW DDNPAQFVIN AMAPADVASI
IVDEDNHSMD IAVEADSLAQ AIGRNGQNVR LATQLTGWEL NVMTVADMNA KHQAESAKVV
ALFMASLDVD EDFAQVLADE GFTSLEEVAY VPVAELLAID GFDEDIVEAL RERAKAAIST
RALASEEALD GAEPSEELLN LEGMDRHLAF VLASRGVVTL EDLAEQGIDD LIEIEELTEE
KAGALIMAAR NICWFGEES
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