| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0954 |
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| Symbol | |
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| ID | 4603206 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1153139 |
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| End bp | 1155091 |
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| Gene Length | 1953 bp |
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| Protein Length | 650 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639780291 |
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| Product | vesicle-fusing ATPase |
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| Protein accession | YP_926831 |
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| Protein GI | 119774091 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0465] ATP-dependent Zn proteases |
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| TIGRFAM ID | [TIGR01241] ATP-dependent metalloprotease FtsH |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000306538 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.326508 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAGTGATA TGGCAAAAAA TCTCATTCTC TGGGTCGTCA TCGCCGTTGT GCTGATGTCG
GTATTCCAGG GTTACTCCCC CTCTTCTTCC TCATCGCAGA AGATGGAATA CTCCACGTTC
CTCGAAGAAA ACAAAGCCGA TCAGATCCTG TCGGTTGAAT TCAAGAGTGA CCAACGCACG
ATTGAAGGGC AAAAACGTAG CGGTGAAAAG TTCACCACTA TCATGCCCAT GTATGACCAG
GACCTGATCA ATGATCTGGT ACGTAAAGGC GTTGTGATTA AAGGGGAAGA AGCGCAGGAA
TCCAGTTTCC TGACTCAAAT TTTCATCTCC TGGTTCCCCA TGCTGCTGCT TATCGGCGTG
TGGATTTTCT TCATGCGCCA GATGCAGGGC GGCGGCGGAA AGGGCGCCAT GTCCTTCGGC
AAGAGCAAAG CCAAGCTGAT GAGTGAAGAT CAGATTAAAA CCACCTTCGC CGATGTCGCT
GGCTGTGATG AAGCCAAAGA AGAAGTGAAG GAAATGGTTG ACTATCTGCG CGACCCGACC
AAGTTCCAGA AACTGGGTGG CCGTATTCCT ACCGGTGTGC TGATGGTTGG TCCTCCAGGT
ACGGGTAAAA CCCTGCTGGC CAAAGCCATT GCCGGTGAAG CCAAGGTACC TTTCTTTACC
ATTTCAGGCT CTGACTTCGT CGAAATGTTT GTGGGCGTGG GTGCGTCCCG TGTTCGTGAC
ATGTTTGACC AAGCCAAAAA GTCGGCTCCC TGTATCATCT TTATCGACGA AATCGATGCC
GTGGGTCGCC AGCGCGGCGC TGGTCTCGGT GGTGGTCACG ATGAGCGTGA GCAAACCCTG
AACCAGATGC TGGTTGAGAT GGATGGCTTC GAAGGCAACG AAGGCATTAT CGTGATTGCC
GCGACCAACC GTCCTGACGT ACTGGATGCC GCGCTCTTGC GTCCAGGCCG TTTTGACCGC
CAGGTGGTGG TGGGTTTGCC AGATGTTCGT GGTCGCGAGC AAATCCTGAA AGTGCATATG
CGCAAAGTGC CGCTGGCTGA AGACGTAAAA GCCAGCGTTA TCGCCCGTGG TACGCCCGGT
TTCTCCGGTG CTGACCTGGC CAACCTGGTA AACGAAGCCG CACTCTTTGC CGCACGAGGC
AACCGCCGCG TGGTGAGCAT GGAAGAGTTT GAGCGCGCTA AAGACAAGAT CATGATGGGC
GCCGAGCGCC GCTCCATGGT GATGTCCGAA GCTGAAAAGG AAATGACCGC ATACCATGAA
GCGGGTCACG CCATCGTGGG TTATCTGGTA CCCGAGCACG ATCCTGTGCA CAAGGTCACT
ATCATTCCCC GTGGCCGTGC ACTGGGTGTC ACCTTCTTCC TGCCAGAGGC TGACGCCATC
AGTCAGAGTC GTCGAAAGCT CGAGAGTAAA ATTTCGGTTG CCTACGGTGG CCGCCTGGCC
GAAGAGCTGA TTTACGGTAC CGAGCAGGTA TCCACTGGCG CGTCGCAGGA CATCAAGTAT
GCAACTTCCA TTGCCCGTAA CATGGTGACC CAGTGGGGCT TCTCGGAAAA ACTCGGTCCG
CTGCTTTATG CCGATGAAGA AGGCGAGGTG TTCCTCGGCC GCTCCATGGC TAAGGCCAAG
CATATGTCCG ATGAGACAGC TGCGCTGATT GATGCAGAGG TCAAAGTCAT CATTGACCGT
AACTACGAGC GAGCCAATCA GTTGCTGGTT GAAAATATGG ACATCCTGCA TGCCATGAAA
GACGCTCTTA TGAAGTACGA AACTATCGAC TCACGTCAAA TTGAAGATTT GATGGAGCGC
CGTGAAGTCC GTCTGCCCGC TGACTGGCAG AAGGATGAAC AAAATGGTGA TAAAGGTGAC
AAGGGTAATA AAGGCGTTGA AGCTGCAGCA CAAGATAATG AGCCTGCAGA GCCTACCGAT
CTGAACCCTG ATGAACCTGT GATCAAACAT TGA
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| Protein sequence | MSDMAKNLIL WVVIAVVLMS VFQGYSPSSS SSQKMEYSTF LEENKADQIL SVEFKSDQRT
IEGQKRSGEK FTTIMPMYDQ DLINDLVRKG VVIKGEEAQE SSFLTQIFIS WFPMLLLIGV
WIFFMRQMQG GGGKGAMSFG KSKAKLMSED QIKTTFADVA GCDEAKEEVK EMVDYLRDPT
KFQKLGGRIP TGVLMVGPPG TGKTLLAKAI AGEAKVPFFT ISGSDFVEMF VGVGASRVRD
MFDQAKKSAP CIIFIDEIDA VGRQRGAGLG GGHDEREQTL NQMLVEMDGF EGNEGIIVIA
ATNRPDVLDA ALLRPGRFDR QVVVGLPDVR GREQILKVHM RKVPLAEDVK ASVIARGTPG
FSGADLANLV NEAALFAARG NRRVVSMEEF ERAKDKIMMG AERRSMVMSE AEKEMTAYHE
AGHAIVGYLV PEHDPVHKVT IIPRGRALGV TFFLPEADAI SQSRRKLESK ISVAYGGRLA
EELIYGTEQV STGASQDIKY ATSIARNMVT QWGFSEKLGP LLYADEEGEV FLGRSMAKAK
HMSDETAALI DAEVKVIIDR NYERANQLLV ENMDILHAMK DALMKYETID SRQIEDLMER
REVRLPADWQ KDEQNGDKGD KGNKGVEAAA QDNEPAEPTD LNPDEPVIKH
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