| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0934 |
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| Symbol | |
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| ID | 4603186 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 1128312 |
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| End bp | 1128824 |
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| Gene Length | 513 bp |
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| Protein Length | 170 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 639780269 |
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| Product | type IV pilus biogenesis protein, putative |
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| Protein accession | YP_926811 |
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| Protein GI | 119774071 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4970] Tfp pilus assembly protein FimT |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.153774 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACATC CGCACGGATT TACGCTCATA GAGCTAATGA TAACAATCGC GATTGCAACC
ATATTGCTTT CTATCGGGCT CCCTCAACTT ACTGAGTTAC ATCAAGCTAA CAGGGCAGAT
TCCGCGATAA AAGTCATTCA ACAAACCTTG CAATACGCCA GAAATACAGC CATCAGCTAT
GGGCTTCGCG TGACAGTATG CCCTCTGAAG GATAACCAAT GCACGAATGA CTGGCACCAA
GGTCTGACAG TATTCACCGA CTCCGGCGTT AGTAATCAGT TAGATGGCAA TGACATATTA
CTGATGCAAA CAGGCTCTTT TGATAGCAAT GACTTTATGT TCTATAACCG CTCAGCTGCA
CGCTTTCTGC CTGATGGTCT TGCTTCGGGC AGCAACGGAA CGTTCAAGTA CTGCCCAGGC
TCAGCAGACA GCCCTTATTC CAAAGCCGTT ATAATTAATC AAGCAGGCAG AGTACGCTTC
TCGACAGATA AAAATATCAA TTGCACTCAA TAA
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| Protein sequence | MKHPHGFTLI ELMITIAIAT ILLSIGLPQL TELHQANRAD SAIKVIQQTL QYARNTAISY
GLRVTVCPLK DNQCTNDWHQ GLTVFTDSGV SNQLDGNDIL LMQTGSFDSN DFMFYNRSAA
RFLPDGLASG SNGTFKYCPG SADSPYSKAV IINQAGRVRF STDKNINCTQ
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