| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0933 |
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| Symbol | |
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| ID | 4603185 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 1127703 |
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| End bp | 1128194 |
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| Gene Length | 492 bp |
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| Protein Length | 163 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 639780268 |
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| Product | methylation site containing protein |
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| Protein accession | YP_926810 |
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| Protein GI | 119774070 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4970] Tfp pilus assembly protein FimT |
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| TIGRFAM ID | [TIGR01708] general secretion pathway protein H
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.133709 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCATAAGA AAAAGCAAGG ATTTACATTA GTCGAGCTCA TGGTCACCAT TGCCGTGGCA
GCAATACTGC TAACTATTGG TGTACCATCG TTAACATCAG TCTATGAGCA AGTGCGAGTA
GATAACAATG TTAAGAAGAT TCATGACCTG TTTGCTTTCG CGCGAAACCA AGCTGTGAGC
TATGGCGCTA CAGTTAAGAT CTGCTCTTTT GCTTCTGCAA CTACATGTGG AACATCAACA
GATTGGAGCA AAGGTATAAG AGTTTATATT ACTGATGCCA GCAACACCGA TCACGAATTA
AGAGCTATAG ACAGTTTTAA TGGGCTGGAC AAAGTTAAGG CATCTGCCGT TTCAATGACC
TTTTCCGCTG ATGGGCTCGC GTCTGGAGGC ACAGTAACAT ATTGCCCGAA TGGCAAAGCC
AGCGATTCAC AGACAGTTCT TATAAGCACT AGTGGACTGG TGTCTTATGG AGCAAACGGC
AACGATTGTT AA
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| Protein sequence | MHKKKQGFTL VELMVTIAVA AILLTIGVPS LTSVYEQVRV DNNVKKIHDL FAFARNQAVS
YGATVKICSF ASATTCGTST DWSKGIRVYI TDASNTDHEL RAIDSFNGLD KVKASAVSMT
FSADGLASGG TVTYCPNGKA SDSQTVLIST SGLVSYGANG NDC
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