| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0932 |
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| Symbol | |
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| ID | 4603184 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1126945 |
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| End bp | 1127343 |
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| Gene Length | 399 bp |
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| Protein Length | 132 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 639780267 |
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| Product | type IV pilus biogenesis protein PilE |
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| Protein accession | YP_926809 |
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| Protein GI | 119774069 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4968] Tfp pilus assembly protein PilE |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0340511 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAATAATA GTAGAAAATT GGGTTTTACG TTGATTGAGT TAATGATAAC GGTTGCTATT
GCTTCTATAT TGGCGGCAAT AGCGTATCCT TCATATGTTA ACTATGTGAC TAAAAGTGGT
CGCTCTGAAG GTGTGGCAGC TGTTATGCGT GTTGCGAATT TGCAGGAGCA GTATTATTTA
GATAATCGTG CTTATGCGAC CGATATGACG AAGTTAGGAT TAAGTGCAAG TCCATTTGTT
ACAGAGAATG GTTATTATAG TGTGGCTTCG GCTGGGACGA GCTCTTTCAC TATTACGGCA
ACTGCAGCAG GGACACAGGC GAGTAGAGAT TCGACATGCG GTACCATTAC ACTGACCTCG
GCTGGTGTTA AGGGGCCCTC AGCGGAGTGT TGGAAATGA
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| Protein sequence | MNNSRKLGFT LIELMITVAI ASILAAIAYP SYVNYVTKSG RSEGVAAVMR VANLQEQYYL
DNRAYATDMT KLGLSASPFV TENGYYSVAS AGTSSFTITA TAAGTQASRD STCGTITLTS
AGVKGPSAEC WK
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