| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0931 |
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| Symbol | |
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| ID | 4603183 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1123322 |
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| End bp | 1126927 |
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| Gene Length | 3606 bp |
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| Protein Length | 1201 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 639780266 |
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| Product | type IV pilin biogenesis protein, putative |
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| Protein accession | YP_926808 |
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| Protein GI | 119774068 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.207337 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTTTA ATCAAATTCT ATTTGCTGGC CTAGTTACAG CATCGGTTTT GCCAGCGCAA
TCTTTTGCGG ATGATACAGA TCTCTATCTC AATCCTGCAG CAAACAATGT GCGTCCCCAA
GTGCTTATTA TTTTTGATAA CTCCGGCAGT ATGGATACCA TAGTCGATGG TGTTGCGGGT
GGTTACGACC CTAATTATAC ACAAGAAGAT GGAACTCTTG GTTACCCTGC CGTAGGAAGT
TCAAATTCTT ATCAGGGTAG AATGATTTAT TTTACCGTTG GAACCGGTAT GGATGAATCT
TCATTACCCG TGCCCGACAG TCCTTCAGAG TCTAGGCGTT TTAATGATTT TTTGAATGGC
TGTAAAGCTG CGAGGGATGC GCTGAATCAG TATGGTCGTT TCACCGGTTA CATCAGAGAG
TTTATTACGA AAGGCAAGGG TAATGGAACT TGGCAACCTA TTAAGGAAAA TAGCGGTGCA
GAACGAAATA ATCCAATTGA TTGCTGGGAA GATATAGAAT CAGAATACAA TAGTAATAAT
GATGATGGAA GCGATTATAA AACTGGCTAT CCGGTCGGAT TCCCCCGTGA CGGAGATGTG
AATAATCCAT GGGGTAGTGA TCTGGATAGT GCGAAAAATC TAAACTGGAA TAATGGTGAG
TTAGTAACGC TTTATACCGA TAATTATTTG CGTTGGTATA CATTGTATAA GAATGGTTCA
CTGCCAGTCC CCCCTGACGG GGAAGGGCTG ACTAGGTTGG AAATAGCTAA GTCTGCAATA
TCGGGTGTTA TAAGCTCTAT TCCTTCAGTG GATTTTGGTT TGGCTATTTA TAATCTGAAT
TTCCCTGATG AAGGTGACAG TGATGGTGGA CGTATTGTCG CGGGTATCCG ACAGAGAACC
GCTGCCGAGA AAGATACGAT GCTTAGCACT ATTAGCAACC TACCTGCGCA AACAAATACA
CCACTTTGTG AAACCTTATT TGAGGCCTAT AGATATTTTT CTGGTGGCCC GATTACATTT
GGTCATGCTG ATGCTGACTA CAACGGCAAG GATATTAAGT ATTCCTCTAA TAAGCCAATG
TATGATGCGA GTATAGAAAA TGGTGCTAAC TATATTACGC CATTGTCTGA GTGTAATAAG
GTGGCTCACA TTATTTATAT TACAGATGGC GCACCAGTTT TAGATGAAAG TGCAAATGAT
TATATTAAGG AATTAGGTGG GGAGCCGTAT GAATATAAAG CGGCAAGTGG CGATCAGGAA
GCGAAGGTAA GTTACCTTCC CGCATTGGCA GAATATATGT TTGCCAACGA TTTATTGCCT
GATGTAGAGA ATAAACAACG CGTGGTAACT CATACGATAG GCTTTAGTTT GGGCGAAGAC
TCAGAGGCAG AACCATTGCT CGTAGAAACC GCCTCACGTT CTTATTTAAT GACGTCTGAA
GGAAAGAAGG TTTTTGGAAC CTACAGAAGT GCAGATGACG TAGCGGGACT TCAAGAGGCT
ATCAGTAATA TTATCGATTC GATTCCGCAG ACTGGGCAAC GCTTTTCAGC GCCCGGTGTC
GCTTTTAGTA ACGCAGATCC TACTAGAACT CTAGATTCAG CTTACTATGC GCTATTTCGT
CCTCAGCAAA GTCCCAAATG GGCCGGTAAT CTGAAAAAAC TTAAAGTTAA TTCATCTGGA
ACTTTAGTTG ATTCTACAGG CAAACCTGCA ATTGACAGTT CAGGTGGTAT TGCCGAAAGT
TCTTGCAGTT TATGGAGTAA CTGTACAGGG GGCAATGACG GGAATGACGT CGTATTAGGA
GGGGCTGCCC GCACGATAGT TCCTGATAGT AGAATCATCT GGAGCGATAT CGATAGCAGT
GAAGATATGG ATAAGCGGAA GCTTACTGTC CAAAACGCTT CAAGTTACGT AGGTGGTGAT
GACGCACTAG CGACATACCT AGGTTTGCCT AAATTAGATG TTGATTCAGA GTTAAAAGAC
ACCTTCGATT GGATATATGG AAAGAATGTA GATAGAGATT CTGAAGGCGC GTTGACCTCT
GAAGATTTCG CCGGTGTAAG GGGCGATATC ATGGGTGATC CGCTTCACTC TCAACCTTTG
GCTATCGATT ACGGCGGTGA TGGTTCGAAC GTTCGCATTT TTGTTGGTAC GAATCATGGC
GCATTGCACG CATTCAGAGA CTCAGGCTCT TCAGTCAGCG AGAGCTGGGC GTTTATGCCT
TTTCAGCTTC TTCCCAACTT GGCAACTATT CGTCGAGATA GCTATTTAGC TGGCCATAGT
GTCTATGGGA TTGATGGTTC ACCTGTCGCT CATATTGAAC GTAATGCTTC TGGTTTGATC
ATGAAAGCTT GGTTGTTTGT CGGATTACGT CGAGGGGGGC AGTCCTATTA CGCCATTAAT
ATTACCGAAC CAGACTCGCC AAAGCTTATG TGGCATATAT CCAACAGCAC CAGTGAATTC
AGCAACATGG GACAAACTTG GTCTACTCCG GTGGTCACCA AAATACCAGG CTCTGAGAAG
CCAGTGGTGA TTTTTGGTGG TGGATACAAC CAAGGTTATG ACTCCGGTGA TGGTTCAAAT
TCTGTTGGCA GAATGGTTTA TCTTGTAGAT GCCGAGTCAG GTAGCTTACT GTATAGTTTC
GGTGCCAATG GAAATACTGT ACTTACAGGT ATCGAAGACT CTATAGTTGG GTCTATTGCA
ACCTTGGATA GTAATAGTGA CGGCTACACT GACCGGCTTT ATGCGGCTGA TTTGGGCGGC
AATGTGTGGC GAATGGATTT GCCTTCTGCG GATAAGAGCA CATGGAGTGG ATTTAAGTTT
GCAGAGTTAG GAGGAAACCT GCCCTCGACC GATCGTAGGT TCTTCTACGA GCCAAGTGTA
GCGCAAACGT ATTTTACAAA TACCACTGAA GTAACTGTCA CTGACGAGTC AGGTACCACA
ACTACGGTAG CGTATCAAAA TGTTCCTTAT GATGCGGTTA CATTGGGATC AGGAAATCGC
GCGGATCCTT TGAGTTTAAA CGCAGAGGAT ATGTTTTTTG TATTACAGGA TAGAAACGTA
GTTTCTCAAC AGTTTGGTGA TGGTGCTACT GCCATTCCAT CTCCAATAAC CTTTGGCAAT
CTTTATGACG TGACTTCGGC GGCACCTTCA ACAGAGGCTG AAAACATTAC ATTTGGGACA
AAGCTGGGCT GGTATTATAA TTTTGCGGTT ACTGGCGAAA AAAGCCTATC CCCGTCTGTC
ATTATAAAAG GAAAAGTCTA CTTTACATCC TTTATTCCGA CCCAGCCTGC GGCAGGTCAG
AATGTTTGCA GTGTGTCTTC AGTTGGACGT TTATATACCT TGGATTTACA CAAAGGATCA
CGTTATAACG AGGCGTATAT TATAGATGTT TGCGATAACT GTATCCCACA GCCGCCAAAA
ATCATCACCC CGCCACCTTG TGATACTGGC GAAGAGTGTT CGCCAGATGA GATATTAAAT
CCACCACCGC CTGTGCTGAT AATAGGTAAA GGAAAATGTG ATGAGAATGG AGAGAATTGC
AGCGGGACTG TGGATTTGGA GTCAGGTTTG ACCACGAATA AGATTTATTA CCACATTGAT
GAGTAG
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| Protein sequence | MKFNQILFAG LVTASVLPAQ SFADDTDLYL NPAANNVRPQ VLIIFDNSGS MDTIVDGVAG
GYDPNYTQED GTLGYPAVGS SNSYQGRMIY FTVGTGMDES SLPVPDSPSE SRRFNDFLNG
CKAARDALNQ YGRFTGYIRE FITKGKGNGT WQPIKENSGA ERNNPIDCWE DIESEYNSNN
DDGSDYKTGY PVGFPRDGDV NNPWGSDLDS AKNLNWNNGE LVTLYTDNYL RWYTLYKNGS
LPVPPDGEGL TRLEIAKSAI SGVISSIPSV DFGLAIYNLN FPDEGDSDGG RIVAGIRQRT
AAEKDTMLST ISNLPAQTNT PLCETLFEAY RYFSGGPITF GHADADYNGK DIKYSSNKPM
YDASIENGAN YITPLSECNK VAHIIYITDG APVLDESAND YIKELGGEPY EYKAASGDQE
AKVSYLPALA EYMFANDLLP DVENKQRVVT HTIGFSLGED SEAEPLLVET ASRSYLMTSE
GKKVFGTYRS ADDVAGLQEA ISNIIDSIPQ TGQRFSAPGV AFSNADPTRT LDSAYYALFR
PQQSPKWAGN LKKLKVNSSG TLVDSTGKPA IDSSGGIAES SCSLWSNCTG GNDGNDVVLG
GAARTIVPDS RIIWSDIDSS EDMDKRKLTV QNASSYVGGD DALATYLGLP KLDVDSELKD
TFDWIYGKNV DRDSEGALTS EDFAGVRGDI MGDPLHSQPL AIDYGGDGSN VRIFVGTNHG
ALHAFRDSGS SVSESWAFMP FQLLPNLATI RRDSYLAGHS VYGIDGSPVA HIERNASGLI
MKAWLFVGLR RGGQSYYAIN ITEPDSPKLM WHISNSTSEF SNMGQTWSTP VVTKIPGSEK
PVVIFGGGYN QGYDSGDGSN SVGRMVYLVD AESGSLLYSF GANGNTVLTG IEDSIVGSIA
TLDSNSDGYT DRLYAADLGG NVWRMDLPSA DKSTWSGFKF AELGGNLPST DRRFFYEPSV
AQTYFTNTTE VTVTDESGTT TTVAYQNVPY DAVTLGSGNR ADPLSLNAED MFFVLQDRNV
VSQQFGDGAT AIPSPITFGN LYDVTSAAPS TEAENITFGT KLGWYYNFAV TGEKSLSPSV
IIKGKVYFTS FIPTQPAAGQ NVCSVSSVGR LYTLDLHKGS RYNEAYIIDV CDNCIPQPPK
IITPPPCDTG EECSPDEILN PPPPVLIIGK GKCDENGENC SGTVDLESGL TTNKIYYHID
E
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