| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0929 |
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| Symbol | |
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| ID | 4603181 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1121868 |
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| End bp | 1122842 |
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| Gene Length | 975 bp |
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| Protein Length | 324 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 639780264 |
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| Product | type IV pilus assembly protein PilW |
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| Protein accession | YP_926806 |
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| Protein GI | 119774066 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4966] Tfp pilus assembly protein PilW |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.902685 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAGGTTC TAATTATGCG CAGTCAGTCA GGGATGTCTC TCGTTGAGTT GATGGTAGCA
CTGGTGATTA GCTTGTTTTT GTCTGCTGGC ATTTTCACTA TGTTCAGCAT GTCAGCTTCG
AATGTGACAA CCACAAGTCA GTTTAATCAA TTGCAAGAAA ACGGTCGCAT CGCCTTGGCG
ATTATGGAGA GGGACCTTAG TCAGTTGGCT TTTATGGGTG ATATGACCGG AACGGATTTT
ATTGTAGGAA GTAACACAAC CATATCATCT GCCGCAGTGC CCAATGATTG TGTCGGTGGT
GGAGTTAATA ACGCCACGCT TCCCAATGGA ACCACATCAC ATTTTAGGCG GATTTGGGGC
TACGAAGCCG GTGTAAGTGG CGATGTTTTT GCGTGCCTTT CTGGGGTAAA AGCAAAAACG
GATGTACTGC AGATCAAGCG TTTGGTTGGG CCTAACACGC TAACGCCCAA TGTTGCATCT
AGTCACTATG TTGCAACCAC ATCAAGCGAA GCTATTTTTT TTACGGGTAA CCAGCCTACT
CCAACACTGA CTAACAGTCG ATTTTGGGAG TATCAGCACC ATATCTATTA TGTAAAAGAT
GATGGCGCTG TTCCCGTTTT AAGGAGAAGA ACGCTTACTG TTGCAAATGG AATGAACAAC
GAAGAGCAGC TCGTAGAAGG TATTGAGAAT CTACGAGTTT TATATGGTGT TGATGATGAT
GGTGATGACA TCCCTAATCG ATATGTTCCA GTGGGTAGTG TCGATACTGT CATGTGGGAT
AACCAATCAT TTCAGCGGAT TGTGGCACTA AAACTGTTTT TGCTTGTCCG TGCGGTTGAG
AAAGACGCTA GCTATAAAAA TGAGACCCAG TATCAGTTGG GTGATAAAAC TATTGCAGCA
CCACAAGACA ACTATAGACG TAAGGTCATG TCAACCACAG TGATGCTTGA AAATCCTGTG
TTGATTAGGA GTTAA
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| Protein sequence | MKVLIMRSQS GMSLVELMVA LVISLFLSAG IFTMFSMSAS NVTTTSQFNQ LQENGRIALA
IMERDLSQLA FMGDMTGTDF IVGSNTTISS AAVPNDCVGG GVNNATLPNG TTSHFRRIWG
YEAGVSGDVF ACLSGVKAKT DVLQIKRLVG PNTLTPNVAS SHYVATTSSE AIFFTGNQPT
PTLTNSRFWE YQHHIYYVKD DGAVPVLRRR TLTVANGMNN EEQLVEGIEN LRVLYGVDDD
GDDIPNRYVP VGSVDTVMWD NQSFQRIVAL KLFLLVRAVE KDASYKNETQ YQLGDKTIAA
PQDNYRRKVM STTVMLENPV LIRS
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