| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0927 |
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| Symbol | ispH |
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| ID | 4603179 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1120174 |
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| End bp | 1121115 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639780262 |
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| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
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| Protein accession | YP_926804 |
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| Protein GI | 119774064 |
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| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0761] Penicillin tolerance protein |
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| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGGAC AGATGAACAT TCTGCTCGCC AATCCACGCG GCTTTTGTGC CGGCGTAGAT
CGCGCTATCA GCATCGTTGA GCGTGCTCTT GAGCTGTTCT CGCCACCTAT ATATGTGCGT
CACGAAGTGG TGCATAACCG TTATGTGGTG CAAAACCTCA AAGATCGTGG TGCTATCTTT
GTTGAAGAGT TGGATCAGGT GCCGGACAAC AGCATAGTGA TCTTCTCTGC CCACGGGGTG
TCGCAGGCGG TGCGGGCCGA GGCCAAAAAG CGTGGTCTGA AGGTATTCGA TGCCACCTGC
CCATTGGTGA CCAAGGTGCA CCTGCAGGTA ACCCGGGCCA GCCGCAAAGG GGTTGAATGC
ATCCTGATTG GCCATGAGGG TCATCCGGAA GTTGAAGGTA CTATGGGCCA GTACGATAAC
CCTGAGGGTG GCGTTTATCT GATTGAGTCG GTGGAAGATG TCGAAGCGCT TCAGGTGAAA
GACCCGGAAA ACCTGTGCTT CGTCACTCAA ACTACATTGT CGGTTGACGA TACGCTGGAC
ATCATCGCGG CGCTGCAGGC GAAGTTTCCG TCCATTGAGG GGCCACGCAA GGACGATATT
TGTTACGCCA CTCAAAATCG CCAGGATGCG GTGCGCAGTC TGGCGACTCA GGCCAAGCTC
TTTATCGTGG TGGGTTCGAA AAACAGCTCC AACTCCAACC GTTTGCGTGA GCTTGCCGAA
AAGTCGGGTG CACAGGCGTA CTTGGTCGAC AGTGCCGCCG ATGTAAAGGC TGAGTGGTTT
GCCAATGTAG ATAAAGTGGC TGTCACAGCC GGAGCATCAG CACCGGAAGT ACTGGTAAAG
CAGGTTATCG ATGCAATTAC CCATCTCGCG CCCAGTGTGG TAACCGAGGT AGAGGGTCGT
AAGGAAGACG TAGTTTTCGC CGTTCCGGTT GAACTCAGGT GA
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| Protein sequence | MTGQMNILLA NPRGFCAGVD RAISIVERAL ELFSPPIYVR HEVVHNRYVV QNLKDRGAIF
VEELDQVPDN SIVIFSAHGV SQAVRAEAKK RGLKVFDATC PLVTKVHLQV TRASRKGVEC
ILIGHEGHPE VEGTMGQYDN PEGGVYLIES VEDVEALQVK DPENLCFVTQ TTLSVDDTLD
IIAALQAKFP SIEGPRKDDI CYATQNRQDA VRSLATQAKL FIVVGSKNSS NSNRLRELAE
KSGAQAYLVD SAADVKAEWF ANVDKVAVTA GASAPEVLVK QVIDAITHLA PSVVTEVEGR
KEDVVFAVPV ELR
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