| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0917 |
|---|
| Symbol | |
|---|
| ID | 4603169 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 1109937 |
|---|
| End bp | 1110710 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 639780252 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_926794 |
|---|
| Protein GI | 119774054 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3022] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.000728538 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGGTTG TAATTTCCCC CGCCAAAACA TTGGATTATG ATAATCCTGC GCCAACGAAA
CAGTACACAT TACCTGAGCT GGTGAGCCAC AGCGCTGAGC TGATAGAAGT CTGTAAGGGC
TTAACACCGG CAGATATCGC TTCTTTGATG TCTGTGAGTG ACAAAATTGC TGGGCTGAAT
GCGGCAAGAT TTGCATCTTG GACACCGTCC TTTTCATTGG AAAACGCCAA GCAGGCTCTC
TTTGCTTTTC GCGGGGATGT TTACACAGGA TTGGACGCCG ACACCCTAAG CCCGGAAGAG
CTCGAGTATG CCCAGTCCCA TCTGCGCATG CTTTCCGGTT TATATGGTGT GTTAAAACCG
CTGGATTTGA TGCAGGCCTA CCGTCTTGAA ATGGGTACAG CCCTTGGCAA TGGCCGTGGC
AAAAACCTGT ACGAGTTTTG GGGCAATCTC ATTACGGATA AGCTGAACGA GGCGTTGTCG
GCTCAAGGGG ATGATATTCT GGTCAATCTT GCGTCCAATG AATACTTCAA GGCCGTCAAA
ATCAAGGGGA TTAAAGGGAC ACTGGTGAAC CCCGTGTTTA AGGATGCCAA AAACGGTCAG
TATAAAATCA TCAGTTTTTA CGCCAAGAAA GCCCGTGGCT TGATGGCACG TTTTATCCTG
ACCACCCGGA CAAAGACCAT AGAAGATCTG AAAAGGTTTG ATTACGATGG CTACTACTAT
AGCCCTGAAC AGTCGACTCC CTGCACGCCT GTGTTTTTAC GGGAAGAGCG GTAA
|
|---|
| Protein sequence | MLVVISPAKT LDYDNPAPTK QYTLPELVSH SAELIEVCKG LTPADIASLM SVSDKIAGLN
AARFASWTPS FSLENAKQAL FAFRGDVYTG LDADTLSPEE LEYAQSHLRM LSGLYGVLKP
LDLMQAYRLE MGTALGNGRG KNLYEFWGNL ITDKLNEALS AQGDDILVNL ASNEYFKAVK
IKGIKGTLVN PVFKDAKNGQ YKIISFYAKK ARGLMARFIL TTRTKTIEDL KRFDYDGYYY
SPEQSTPCTP VFLREER
|
|---|
| |