Gene Sama_0913 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0913 
Symbol 
ID4603165 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp1103101 
End bp1104054 
Gene Length954 bp 
Protein Length317 aa 
Translation table11 
GC content52% 
IMG OID639780248 
Producttransaldolase B 
Protein accessionYP_926790 
Protein GI119774050 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0176] Transaldolase 
TIGRFAM ID[TIGR00874] transaldolase 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.507004 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCAATA CCTTAGAGCA ACTCAAATCC TTTACCACCA TAGTCGCTGA TACCGGCGAT 
ATCGAAGCCA TCAAACGCTC TCAGCCTGAA GATGCCACCA CCAACCCTTC ATTGATCCTG
AAAGCAGCGC AAATCCCTGA ATATTCAGGC CTTATCGATA ATGCCATTGC CTGGGCCAAA
ACCCAGAGTG ACAATCTTGA AACCCAAATT GAAGACGCTG CCGATAAACT GGCTGTCAAC
ATAGGTCTGG AAATCCTGAA ACTGGTTCCC GGCCGCATCT CCACTGAAGT CGATGCCCGT
CTGTCTTTCG ATAAAACAGC TTCTATCGCC AAGGCCCATA AGCTTATCCG TCTGTATCAG
GAAGCCGGTA TCGATAAGAG CCGCATCCTG ATCAAACTGG CTTCCACATG GGAAGGTATC
TGTGCCGCTA AAGAGCTTGA GGCCGAAGGC ATCAACTGTA ACCTCACGCT GCTGTTCAGC
TTTGCCCAGG CTCGCGCCTG CGCCGAAGCC GGTGTATTTC TGATTTCACC TTTCGTTGGC
CGCATTCTCG ACTGGTACAA GAAGTCTACC GGCAAAGATT ACCGCGCCAG TGAAGACCCG
GGCGTTGTAT CAGTAACTGA TATCTACAAC TACTATAAGC GCCACGGTTA CAAGACTGTG
GTGATGGGCG CAAGCTTCCG TAACACTGGT GAAATCATTG AGCTGGCTGG TTGTGACCGC
CTGACCATTG GCCCGTCATT GCTCGAAGAA ATGGCCGCCA GCAACACCCC TGTGGTACGT
AAATTGACAC CGACGACCGA CACTGTTGCA CCGGGTCCTG TAATGAGCGA AGCCGAATTC
CGCTGGGAGA TGAACCAGGA TGCCATGGCA GTTGAAAAGC TGGCCGAAGG GATCCGTAAC
TTCGCCATCG ATCAAGGCAA ACTGGAAGAG ATGCTCAAGG CTAAACTGGC CTGA
 
Protein sequence
MANTLEQLKS FTTIVADTGD IEAIKRSQPE DATTNPSLIL KAAQIPEYSG LIDNAIAWAK 
TQSDNLETQI EDAADKLAVN IGLEILKLVP GRISTEVDAR LSFDKTASIA KAHKLIRLYQ
EAGIDKSRIL IKLASTWEGI CAAKELEAEG INCNLTLLFS FAQARACAEA GVFLISPFVG
RILDWYKKST GKDYRASEDP GVVSVTDIYN YYKRHGYKTV VMGASFRNTG EIIELAGCDR
LTIGPSLLEE MAASNTPVVR KLTPTTDTVA PGPVMSEAEF RWEMNQDAMA VEKLAEGIRN
FAIDQGKLEE MLKAKLA