| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0885 |
|---|
| Symbol | |
|---|
| ID | 4603137 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 1073550 |
|---|
| End bp | 1074077 |
|---|
| Gene Length | 528 bp |
|---|
| Protein Length | 175 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639780220 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_926762 |
|---|
| Protein GI | 119774022 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4539] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.335543 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACAG CAGCAGAGCA ACTGGCACGC TATAAGAGTG TGCACCTGAA CCCCAACAAC
ATTAAAACCC ACTTTGTTGG TATTCCCCTT ATCATCTGGT CGGCCTTTGT CTGGCTTGGG
CTGATCCGCT TTGAGCTTGG CGGCTTTGGC GAGGCCAGCG CGGCAATGGT GTTTACTTTG
GTCGTGCTGG CTTACTACCT TAAACTGCAC CTGCGCCTTG CCGTTGGCAT GCTGATGTTT
ATCCTGCCGG TGCTTTACAC CTCAGACATG ATGGCGACAG TCCCCCACGC CGCCTGGATT
GCCGCTGTCG TGTTTGTGAT TGGCTGGGTG TTCCAACTGA TTGGTCACAA GTACGAAAAG
GCCAAGCCGG CGTTTGTGGA TGATATGAAT CAGCTGTTGA TTGGACCTTT CTTTTTGATG
GCTGAGGTGT ATTTTGCATT GGGATTTGAA AAAGCGCTCG AGCGTGAGAT TACGCCACAG
GCCATAGCGC TGCGAAGAGT GCTTGAAGCG AGCCGCAAGA CCGCTTGA
|
|---|
| Protein sequence | MKTAAEQLAR YKSVHLNPNN IKTHFVGIPL IIWSAFVWLG LIRFELGGFG EASAAMVFTL
VVLAYYLKLH LRLAVGMLMF ILPVLYTSDM MATVPHAAWI AAVVFVIGWV FQLIGHKYEK
AKPAFVDDMN QLLIGPFFLM AEVYFALGFE KALEREITPQ AIALRRVLEA SRKTA
|
|---|
| |