| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0878 |
|---|
| Symbol | |
|---|
| ID | 4603130 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 1066895 |
|---|
| End bp | 1068685 |
|---|
| Gene Length | 1791 bp |
|---|
| Protein Length | 596 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 639780213 |
|---|
| Product | GTP-binding protein LepA |
|---|
| Protein accession | YP_926755 |
|---|
| Protein GI | 119774015 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0481] Membrane GTPase LepA |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR01393] GTP-binding protein LepA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0457897 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0657108 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACACA TTAGAAACTT CTCCATCATT GCCCACATCG ACCACGGCAA GTCCACTCTG
TCTGATCGCC TTATTCAGGT GTGTGGTGGT CTGACGGACC GTGAGATGGC CGAACAGGTC
CTGGATTCCA TGGATCTTGA GCGTGAGCGT GGCATTACCA TTAAAGCCCA GAGTGTGACC
CTGGACTACA CTGCTAAAAA TGGTGAGACC TATCAGCTGA ACTTCATTGA TACCCCCGGC
CACGTGGACT TCTCCTATGA AGTATCCCGT TCTCTTGCTG CCTGTGAAGG CGCGCTCTTG
GTGGTGGATG CCGGTCAGGG CGTAGAAGCC CAGACACTGG CCAACTGTTA CACGGCACTG
GAAATGGATC TGGAAGTGGT GCCGGTATTG AACAAAATCG ACCTGCCCCA GGCCGAGCCT
GAGCGTGTGG CCGCCGAGAT TGAAGACATA GTCGGTATCG AAGCCACAGA TGCGGTGCGC
TGCTCTGCCA AGACAGGTGT CGGTATCGGT GAAGTACTCG AGACCATAGT GGCGCAGATC
CCGTCGCCGG AAGGCGACCC TGAGGCGCCA CTGCAGGCGC TTATCATCGA CTCCTGGTTC
GACAGCTACC TTGGCGTTGT GTCGTTGGTG CGTATCAAGA ACGGTGTGCT CAAGAAGGGC
GACAAGTTCA AGGTGATGAG TACAGGCCAG GCGTACAACG CGGATCGCGT CGGTATCTTC
ACACCGAAGA TGAAAGACCA GGCTGAACTT AAAACCGGTC AGGTTGGTTA TGTTATCGCT
GGCATCAAAG AAATTCACGG CGCGCCCGTG GGTGATACCC TGACCCTGGC CAAGCACGGT
GCCGACAAAC CGCTGCCGGG CTTTAAGAAG GCGAAGCCTC AGGTATACGC CGGTGTGTTT
ACCATCTCCA CCGACGACTA CGAAAGCTTC CGTGATGCGC TCAACAAGCT CAGCCTCAAC
GATGCTTCTT TGCAGTTTGA GCCAGAAACC TCTTCGGCTC TGGGCTTTGG TTTCCGTATC
GGTTACCTGG GTCTGCTGCA CATGGAAATC ATTCAGGAAC GTCTGGAGCG TGAATACGAT
CTGGACCTCA TCACCACGGC CCCTACCGTG GAATACGAAG TGCTGCTCAC CAACGGCGAA
ACCCTGTACG TGGATAACCC GTCGGATCTG CCGGCCACCA ATTACATCGA AGAGATGCGT
GAGCCTATCG TTCAGGCCAA CATTCTGGTG CCGAAAGAGT ATCTGGGTAA CGTGATCACC
CTGTGTATCG AGAAGCGCGG CGTACAGAAG AACATGGTTT ACCACGGTAA CCAGGTGGCC
CTGACTTACG ATATCCCAGC CGCTGAAGTG GTGATGGACT TCTTCGACCG ACTCAAGTCG
ACCAGCCGTG GTTATGCCTC GCTGGAATAT AACTTTATCC GCTTCGAGCC CGCCGACATG
GTGCGTCTGG ACGTGCTGAT CAACGGCGAC CGCGTGGACG CGCTGGCGAT GATCATTCAC
CGCTCCAACA TCCGCCACAA GGGTATTGCC CTGGTGGACA AGATGAAAGA GCTGATCCCA
AGGCAGATGT TTGATATCGC CATTCAGGCG GCCGTTGGTA ACCAGGTTGT CGCCCGCTCC
ACCGTGAAGG CCTTGCGTAA AGACGTAACC GCCAAGTGTT ACGGTGGTGA CGTGTCCCGT
AAGAAGAAAC TGTTGCAGAA GCAGAAAGAA GGTAAGAAGC GGATGAAGCA ACTGGGTAAC
GTGGAAGTAC CTCAGGAAGC CTTCCTCGCG GTGCTCAAGC TTAACGAATG A
|
|---|
| Protein sequence | MKHIRNFSII AHIDHGKSTL SDRLIQVCGG LTDREMAEQV LDSMDLERER GITIKAQSVT
LDYTAKNGET YQLNFIDTPG HVDFSYEVSR SLAACEGALL VVDAGQGVEA QTLANCYTAL
EMDLEVVPVL NKIDLPQAEP ERVAAEIEDI VGIEATDAVR CSAKTGVGIG EVLETIVAQI
PSPEGDPEAP LQALIIDSWF DSYLGVVSLV RIKNGVLKKG DKFKVMSTGQ AYNADRVGIF
TPKMKDQAEL KTGQVGYVIA GIKEIHGAPV GDTLTLAKHG ADKPLPGFKK AKPQVYAGVF
TISTDDYESF RDALNKLSLN DASLQFEPET SSALGFGFRI GYLGLLHMEI IQERLEREYD
LDLITTAPTV EYEVLLTNGE TLYVDNPSDL PATNYIEEMR EPIVQANILV PKEYLGNVIT
LCIEKRGVQK NMVYHGNQVA LTYDIPAAEV VMDFFDRLKS TSRGYASLEY NFIRFEPADM
VRLDVLINGD RVDALAMIIH RSNIRHKGIA LVDKMKELIP RQMFDIAIQA AVGNQVVARS
TVKALRKDVT AKCYGGDVSR KKKLLQKQKE GKKRMKQLGN VEVPQEAFLA VLKLNE
|
|---|
| |