| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0875 |
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| Symbol | |
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| ID | 4603127 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1064777 |
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| End bp | 1065373 |
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| Gene Length | 597 bp |
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| Protein Length | 198 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639780210 |
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| Product | sigma-E factor negative regulatory protein |
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| Protein accession | YP_926752 |
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| Protein GI | 119774012 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3073] Negative regulator of sigma E activity |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.304231 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0528979 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAAAGA CCGGACAGGA ATGGGTATCT GCGAGTGTTG ATGGCGAAAC CGATCGTCAG
ACCCTTGCCG AGCTTGCAGC AGATACGGAT TCTCATGCCA AGTGGCAGCG TTATCACCTG
ATGGGTGATG CCATGCGCGA TGAATTGCCT CAGGCAATGC CACTCGATTT GTCTGCCCGC
ATTGCGGCCG CACTCGAGGA TGAGCCTACT ATTCTGGCAC CCAAGGTTGA GCGCGAAGCA
ACTCAGGCGC CTTCCCGTGC TGTGGTTGTT CCCTTTATGC GCCAGCTCGG TCAGTACGGT
ATAGCCGCCG CTGTGGCACT GATGGCGGTT GTTGGGGTGC AGAATTATCA GAGCACCCAG
GATGATGCGC CGCTGCCAGT ACTTAACACC CGTCCTCTGG TCGGCACTGC GACGCCCGTG
AGCCTGCAAA CCGGACCCGT TGCGAACCAG AATCAGGGCA ATGCCAACGA TCAGTTGCTC
GAACAGCGTC GCCGTATTAA CGCCTACCTG CAAGATCATA TGTTGCAGCA GAGATTGAAC
ACCGGGGCGG TTGTGGACGA CAATAGCGAG GTAACCCCAA TTCCAGTCAA TCGCTGA
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| Protein sequence | MEKTGQEWVS ASVDGETDRQ TLAELAADTD SHAKWQRYHL MGDAMRDELP QAMPLDLSAR
IAAALEDEPT ILAPKVEREA TQAPSRAVVV PFMRQLGQYG IAAAVALMAV VGVQNYQSTQ
DDAPLPVLNT RPLVGTATPV SLQTGPVANQ NQGNANDQLL EQRRRINAYL QDHMLQQRLN
TGAVVDDNSE VTPIPVNR
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