Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0874 |
Symbol | |
ID | 4603126 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 1064144 |
End bp | 1064722 |
Gene Length | 579 bp |
Protein Length | 192 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 639780209 |
Product | RNA polymerase sigma factor RpoE |
Protein accession | YP_926751 |
Protein GI | 119774011 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02939] RNA polymerase sigma factor RpoE |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.145718 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.11667 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGGAC AAAAAAGCGA TCAAGAGCTC GTAGAGCTGG TGCAGCAGGG AGATAAAAAC GCATTCAACC TTCTGGTGCT CCGTTACCAG AGCAGGGTGA TTAACCTGAT TTCCCGTTAT GTGCGCAATC AGGCCGATGT GGCCGATGTA GCACAGGAAG CCTTTATCAA GGCTTATCGG GCGCTGGCTA ATTTCCGCGG CGAGAGTGCG TTTTACACCT GGCTGTACCG CATCGCGGTC AACACGGCAA AAAATTATCT GGTATCCCAG GGCCGCAGAG CGCCGGCCAA CGATGTCGAT GCCGATGATG CCGAGTACTA TGACGGCAGT GATGCATTAA AAGAGTTTGC CTCGCCGGAG CGACTGATGT TGTCTGACGA AATCAAACGT GTGGTGTTTG AGACGTTGGA AGAGTTGCCC GAAGAGCTAA AGATGGCCAT TTCCCTGCGT GAGCTCGATG GTATGAGCTA CGAAGATATC GCCAACGTGA TGGAATGCCC TGTGGGCACT GTGCGTTCGC GGATTTTCAG AGCACGGGAA GTGATAGACA GGAAGCTGCA GCCGCTGCTG GAGTCCTGA
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Protein sequence | MSGQKSDQEL VELVQQGDKN AFNLLVLRYQ SRVINLISRY VRNQADVADV AQEAFIKAYR ALANFRGESA FYTWLYRIAV NTAKNYLVSQ GRRAPANDVD ADDAEYYDGS DALKEFASPE RLMLSDEIKR VVFETLEELP EELKMAISLR ELDGMSYEDI ANVMECPVGT VRSRIFRARE VIDRKLQPLL ES
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