| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0873 |
|---|
| Symbol | |
|---|
| ID | 4603125 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 1062349 |
|---|
| End bp | 1063956 |
|---|
| Gene Length | 1608 bp |
|---|
| Protein Length | 535 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639780208 |
|---|
| Product | L-aspartate oxidase |
|---|
| Protein accession | YP_926750 |
|---|
| Protein GI | 119774010 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0029] Aspartate oxidase |
|---|
| TIGRFAM ID | [TIGR00551] L-aspartate oxidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.252939 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAAG CAGTTGAACA CCAGTCAGAC ATTCTGGTCA TCGGCAGCGG TGCTGCTGGC
CTGACTTTGG CACTCCATCT TGCTGAAAAA GCAAAGGTAA TTCTGATTTC CAAAGGGCCG
CTCAGTGAAG GGTCCACCCT GTACGCCCAG GGAGGCATTG CCTCAGTGTT CGACGAGGGC
GACACCATTG AGTCCCACGT CGAGGACACT CTGGTGGCCG GTGCGGGTAT CTGTGATGAG
ACTGTGGTCA CCTATACCGC CGCCAACGCC AAGGCAGCCA TGCAGTGGCT CATCAGCTGC
GGCGTGCCCT TTGATAAAGA AGAGCACATC ACCAACGAAG CCCAGCCTTA CCACCTGACC
CGGGAAGGTG GCCACAGCCA CAGACGCATT CTGCATGCCG CAGACGCCAC CGGCAAAGCG
GTTCAGACCA CCCTGCAGGA GCTGGCAGCC AACCACCCTA ATATTCAGGT GCTGGAGCGC
TACAACGCCA TCGACCTTAT TACCACCCGC AAACTGGGCC GCACCGGCAA TCGGGTGCTG
GGCGCCTATG TGTGGAATCG CAGTCAGGAG CAGGTTGAGA CCGTGAAGGC ACGTTTCGTG
GCGCTCGCCA CCGGCGGCAG CTCCAAGGTG TATCAGTACA CATCCAATCC GGACGTGGCC
AGCGGCGATG GCATTGCCAT GGCCTGGCGT GCCGGGTGCC GGGTGGCCAA CATGGAGTTT
AACCAATTCC ACCCAACCTG CCTGTACCAT GCAGAAGCCC GTAACTTCCT GCTGACCGAA
GCCCTGCGCG GCGAAGGCGC GTATCTGCGC CGACCCGATG GCAGCCGCTT TATGCCGGAC
TTCGATGAGC GCGCCGAACT CGCGCCCCGC GATATTGTCG CCCGCGCCAT CGACTATGAG
ATGAAACGCC TGGGTGTGGA CTGCATGTAT CTGGACATCA GCCACAAACC GGCGGACTTT
ATTATCAAGC ACTTCCCGAC CATACACAGC CGTTGCCTGG AATTGGGTCT GGACATTACC
AAAGAGCCCA TCCCCATAGT TCCCGCCGCC CACTATACCT GCGGCGGTGT GATGACAGAT
TTGCACGGTC AGACGGATCT CAACGGTCTT TATGCCATAG GCGAAGTGGC CTATACGGGT
CTTCATGGAG CCAACCGTCT GGCCAGCAAC TCTCTGCTGG AATGTCTGGT GTTTGCCCGC
GCCGCCGCAC AGGACATTGA GAGTTTGATG GGCAAGATTG CCATGCCGGG TCAGCTGCCA
GCCTGGGATG AAAGCCGGGT GAGTAACTCA GACGAAGAAG TGGTCATTGC CCACAACTGG
CATGAACTGC GCCTCTTTAT GTGGGACTAC GTAGGCATAG TTCGCACCGA TAAACGCCTC
GAGCGGGCGC TCAGGCGGGT AACCATGCTG CAACAGGAAA TCCAGGAGTA TTACTCCAAC
TTCCGGGTCA GCAATAACCT GCTGGAGCTG CGTAATCTGG TGCAGGTGGC CGAACTTATC
ATTCGCTGTG CCATGGCGCG TAAAGAAAGC CGCGGCCTGC ACTGTAACCT CGACCATCCT
GAAAAACTCG ACGTCTCGGG CCCTACGATT TTAACGCCCG AGCGTTAA
|
|---|
| Protein sequence | MKQAVEHQSD ILVIGSGAAG LTLALHLAEK AKVILISKGP LSEGSTLYAQ GGIASVFDEG
DTIESHVEDT LVAGAGICDE TVVTYTAANA KAAMQWLISC GVPFDKEEHI TNEAQPYHLT
REGGHSHRRI LHAADATGKA VQTTLQELAA NHPNIQVLER YNAIDLITTR KLGRTGNRVL
GAYVWNRSQE QVETVKARFV ALATGGSSKV YQYTSNPDVA SGDGIAMAWR AGCRVANMEF
NQFHPTCLYH AEARNFLLTE ALRGEGAYLR RPDGSRFMPD FDERAELAPR DIVARAIDYE
MKRLGVDCMY LDISHKPADF IIKHFPTIHS RCLELGLDIT KEPIPIVPAA HYTCGGVMTD
LHGQTDLNGL YAIGEVAYTG LHGANRLASN SLLECLVFAR AAAQDIESLM GKIAMPGQLP
AWDESRVSNS DEEVVIAHNW HELRLFMWDY VGIVRTDKRL ERALRRVTML QQEIQEYYSN
FRVSNNLLEL RNLVQVAELI IRCAMARKES RGLHCNLDHP EKLDVSGPTI LTPER
|
|---|
| |