| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0870 |
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| Symbol | nhaR |
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| ID | 4603122 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1060712 |
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| End bp | 1061620 |
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| Gene Length | 909 bp |
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| Protein Length | 302 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639780205 |
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| Product | transcriptional activator NhaR |
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| Protein accession | YP_926747 |
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| Protein GI | 119774007 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.1204 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCAGCATC TGAATTACAA CCATCTTTAT TATTTCTGGA TGGTACAGAG CAAGGGCTCG
GTGGTAAAAG CTGCCGAGGC CCTGTGCCTC ACACCACAAA CCGTTACCGG GCAGATCCGT
GCGCTGGAAG ACAGGCTCGG TGGTGCGCTG TTCAAACGGG TTGGGCGACA ACTTGAACCC
ACGGACTTGG GGGAGCTGGT TTTTCGATAC GCCGACAAGA TGTTCAACTT AAGCTATGAG
CTTTTGGACA TATTGAACTA CCGCAAAGAC GCTGCCATGT TGTTTGAGGT GGGCATTGCA
GATGCTCTGT CCAAGGCGCT GTCGAGCCGG GTACTCCTGT CTGTGTTGCC TACAGACGGT
AGTATGCGTC TGGCCTGTTA TGAAGCTACC CACGAGAGCC TGATGGCACG ATTGCGGGAG
CATAAATTGG ACATGATCCT GTCTGATTGT GCCGGTGAGT CCCTCAAATA TCCGGAAATC
CTGTCCAAAA AGTTGGGAGA GTGCGGCGTC AGTTTCTTCT CTTCTAAAAC CTACACCAAG
CCTTTCCCCG CCTGCCTTGA GGAAGACAAG CTGCTCATCC CGGGAAAGCG CACCAGCCTT
GGGCAGCAGC TGCATCGCTG GTTTGCTGAA AAGAACCTCG AAGTGCGTAT TCTCGGGGAA
TTCGACGATG CGGCCATGAT GAAAGCCTTC GGCTTTTTCG GACAAGGGAT TTTTGTCGCC
CCGTCGATTT ACAAGCAGGA TATTTTAGGC CACGGCATGC AAGTGATAGG CGAAACTCGG
GACGTTCGGG AGGAATATCA TGTGATGTTC GCCGAGCGCA TGATCCAGCA TCCAGCGGTT
CAACGATTGC TTGAGACACG TTTTGATGAC CTGTTTTCAG GGCTCGACAG TCAGGTTCAG
AGCTTTTAA
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| Protein sequence | MQHLNYNHLY YFWMVQSKGS VVKAAEALCL TPQTVTGQIR ALEDRLGGAL FKRVGRQLEP
TDLGELVFRY ADKMFNLSYE LLDILNYRKD AAMLFEVGIA DALSKALSSR VLLSVLPTDG
SMRLACYEAT HESLMARLRE HKLDMILSDC AGESLKYPEI LSKKLGECGV SFFSSKTYTK
PFPACLEEDK LLIPGKRTSL GQQLHRWFAE KNLEVRILGE FDDAAMMKAF GFFGQGIFVA
PSIYKQDILG HGMQVIGETR DVREEYHVMF AERMIQHPAV QRLLETRFDD LFSGLDSQVQ
SF
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