| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0860 |
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| Symbol | |
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| ID | 4603112 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1050167 |
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| End bp | 1051138 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 639780195 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_926737 |
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| Protein GI | 119773997 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00062779 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0657108 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTTAAAGT GCAAAGTGTC CTATCAATCC ATCCAAGCGG CGGTAATCGG TAAAATGAAA
CATCTTCCCA GCCTTAAAAA TCTCTATTAT CTGGTGAATC TCTATCAGGA ACAGAATTTT
AATCGCGCCG CCAAGGTATG TAATGTCAGT CAGTCGACCC TCTCCAGTGG TATTCAAAAT
CTTGAGGAGC AACTGGGACA TCAATTGATT GAACGCGATC ATAAGTCATT TATGTTTACG
GCCATCGGTG AAGAAGTGGT TGGCCGCTGC CGCAAAATTC TGACCGATGT GGATGATTTG
GTGGAGTTGG TGCGCAATCA GGGCGAACCC ATGACCGGGG AAATCCGTTT GGGCTGTATC
CCCACCATAG CCCCTTTTCT ACTGAGCCGG GTGGTGCGTC ACTGTCAGCA GCACTATCCC
AACATGGTAT TACTGCTGAA AGAAGACACC ACCGAGCGCC TGCTCGATGC CCTTGGTAAA
GGTGAACTGG ATTTACTGTT GTTGGCCTTG CCTGTGGATA CTTCAGGATT TCACAGCATG
AAAGTTGGTG TGGACCCGTT CAAGATGGTG ATGCACAAAG ACTTGTCCCA TGAAGTGCAT
CAGCCGGTGG ACTATCAGGC GTTACCGGAC GAAAGTATTT TTCTGCTGCA GAATGAACAC
TGTATTACGG GTCATGCCAT CAGTGCCTGT CAGTTGGGCG ACTCCAACAA GATTAATCCC
TTTGCTGCAA CCAGTCTGCA CACCCTGGTG CAAATGGTAA ACAGTAAGCT GGGCACCACC
TTCCTGCCAC AAATGGCCAT TGATGCGGGT ATCCTCAAAG ACACTGAACT CGCGGTGATG
GACCCACCGG GCAGTGCACC CTATCGCGAT ATAGGGTTGG TGTGGCGTCA AACGACCAGC
CGCATCCGAA CGTTCAGAAC ACTGGGGTTG GAAATCGAAA AGTTGCTCGG TGGCGAATCC
AGGCAGGGCT GA
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| Protein sequence | MLKCKVSYQS IQAAVIGKMK HLPSLKNLYY LVNLYQEQNF NRAAKVCNVS QSTLSSGIQN
LEEQLGHQLI ERDHKSFMFT AIGEEVVGRC RKILTDVDDL VELVRNQGEP MTGEIRLGCI
PTIAPFLLSR VVRHCQQHYP NMVLLLKEDT TERLLDALGK GELDLLLLAL PVDTSGFHSM
KVGVDPFKMV MHKDLSHEVH QPVDYQALPD ESIFLLQNEH CITGHAISAC QLGDSNKINP
FAATSLHTLV QMVNSKLGTT FLPQMAIDAG ILKDTELAVM DPPGSAPYRD IGLVWRQTTS
RIRTFRTLGL EIEKLLGGES RQG
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