Gene Sama_0858 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0858 
Symbol 
ID4603110 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp1048333 
End bp1049286 
Gene Length954 bp 
Protein Length317 aa 
Translation table11 
GC content55% 
IMG OID639780193 
Producthypothetical protein 
Protein accessionYP_926735 
Protein GI119773995 
COG category[R] General function prediction only 
COG ID[COG1242] Predicted Fe-S oxidoreductase 
TIGRFAM ID[TIGR01212] radical SAM protein, TIGR01212 family 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.104064 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.132523 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCTCAAC CGGTTAGCGT AACGCCCACA TTGGATGCGC TGGTAAACAC CTTCGGCAAT 
GACTGCCGTC TTCGGTTTGG CAAGCGGGTA CGCAAGTTGA CCCTGGATGC GCATTTTACC
TGCCCAAACC GCGATGGCAG TCTCGGCATT GGTGGCTGCA CTTTTTGCCA TGTGCCTTCT
TTCAACGCCG ACGATGGCCA GCAGTTTGAT ATCCCATCGC AGCTTAAGCG GCAGATGGCC
GGGCGAACTG ATGCGCTGTA TTTCATTTAT TTTCAGGCTT ACACCAGTAC CTACGATGAG
GTTGCCGTAC TTAAGCGCAG ATACGATGAG GCGCTGTCGA TTGGGAATGT GGCGGGACTC
TTTGTGGGAA CACGCCCTGA CTGTGTTCCT GATGCGGTGC TGCATTTGTT GGCCGACTAT
CAACAGCAGG GGATCGATGT GTGGCTGGAT TTGGGGCTGC AGACCGCCCG GGATGACACC
CTGAAAAGAA TCAATCGGGG CCATGATTTT GCCATATATG CTGATGCCGT GACCCGGGCC
AGAAGGCTGG GCATCAAGGT GTGTACCCAT CTTATCCTGG GATTGCCCGG AGAGACGTCA
GAGGATTTCG TCGAATCACA CCGGCAGGTG CTGGCACTTG GAGTCGATGG CCTCAAGCTG
CATCCACTGC ATATAGTGGA AGGCAGCATC ATGGCGAGGC AGTGGCGGGC AGGAAGGCTC
GATACCTTGA GTTTGGATGA TTACGTGAAC GCCGCGGTGC GTCTTATTCA ACGCACTCCG
GCAGACATTA TTTTACACCG GGTTACGGCC CACGCCAGGC CGCCTTTGTT ATTGGCACCC
GATTGGTGTG GTCATAAATG GTTGGGGATG GGGGCCATTT GCAGCAGTCT GGCACGAACG
GGTGGCCAGG GCTGTTTGAC TGAATATCCT TACCTCAATG ATAAAAATAC GTAA
 
Protein sequence
MSQPVSVTPT LDALVNTFGN DCRLRFGKRV RKLTLDAHFT CPNRDGSLGI GGCTFCHVPS 
FNADDGQQFD IPSQLKRQMA GRTDALYFIY FQAYTSTYDE VAVLKRRYDE ALSIGNVAGL
FVGTRPDCVP DAVLHLLADY QQQGIDVWLD LGLQTARDDT LKRINRGHDF AIYADAVTRA
RRLGIKVCTH LILGLPGETS EDFVESHRQV LALGVDGLKL HPLHIVEGSI MARQWRAGRL
DTLSLDDYVN AAVRLIQRTP ADIILHRVTA HARPPLLLAP DWCGHKWLGM GAICSSLART
GGQGCLTEYP YLNDKNT