Gene Sama_0856 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0856 
SymbolgltD 
ID4603108 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp1041950 
End bp1043368 
Gene Length1419 bp 
Protein Length472 aa 
Translation table11 
GC content59% 
IMG OID639780191 
Productglutamate synthase subunit beta 
Protein accessionYP_926733 
Protein GI119773993 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only 
COG ID[COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases 
TIGRFAM ID[TIGR01318] glutamate synthase small subunit family protein, proteobacterial 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.428629 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTAACG ACTTTCAGTT TATTCAGGTA GGCCGCAAAG ATCCGACCAA GCAGCCCATT 
AAGCTGCGTG CAACACAGTT TATTGAAATT TATCAGCCTT TTACTCAACC ACAGGTCAAC
GAGCAGGCAG ACCGCTGCCT GGACTGCGGT AACCCTTACT GTGAATGGAA GTGCCCGCTG
CACAATTACA TTCCCAACTG GCTGAAGCTC GCCAAACAGG GGCGCATCAT GGAAGCGGCA
GATCTGGTCC ACGAGACCAA CACCCTGCCG GAAATCTGCG GCCGGGTTTG CCCCCAGGAC
AGGCTCTGTG AAGGCGCCTG TACCCTGAAT GATGATTTTG GCGCCGTAAC CATAGGTAAC
GTCGAGAAAT ACATCACAGA TACTGCCCTC GCCCAGGGTT GGCGCCCTGA TATGAGTAAG
GTCACGCCCC GCAAAGAGCG GGTGGCGATC GTCGGTGCTG GCCCGGCGGG CCTTGGCTGC
GCCGATATCC TGGCCCGCAA CGGCATCAAG GCAGTGGTGT TCGACAAATA TCCACAAATC
GGCGGCCTGC TGACCTACGG TATTCCTTCA TTCAAACTGG ATAAGTCGGT GATGCAGACC
CGCCGAACCG TGCTGGAGGG TATGGGCATC GAGTTTCGTC TGGGCGTTAC CGTGGGCAAG
GACATCGCCT TCGCCGACCT GCTTAAAGAC TATGACGCCG TATTCCTCGG CATGGGCACC
TACAGCGCCA TGAAGGCGGG GCTGCCCGGT GAAGACGCCG ACGGTGTGCT ACAGGCATTG
CCCTATCTGA TTGGCAACAC CATGTCGCTG CTCGGTCAGC AAAGTGAACA GAACCCCTAT
ATCGACCTGG CAGGTAAAAA AGTCGTGGTA CTGGGTGGCG GTGACACCGC CATGGACTGC
GTGCGTACCG CAGTGCGCCA GGGCGCGCGC GAAGTGACCT GTGCTTACCG CCGCGATGAA
GCCAACATGC CCGGCTCCCG CCGCGAGGTG CAAAACGCCC GCGAAGAAGG GGTGAACTTC
CTGTTCAACC GTCAGCCTGT TGCCATCAAG ACCGAAAACG GCGCCGTGGT GGGTATCGAG
TGCATCGAGA CCCGCATGGG TGAACCCGAT GCCAATGGCC GCCGCTCTGC CGAGCCCGTT
CCCGGCAGCG AACAGCTCCT CGAAGCCGAT GCCATCATCA TCGCCTTTGG CTTCCAGCCA
AGTCCTGCCC CCTGGTTTGC CGATTTCGAT ATCGCCCTGG ATGACAAGGG CCGGGTCAAG
GCCAGCAAAG CCGATGACAA TCCATTCCAA ACCAGCAATC CCAAGGTGTT TGCCGGTGGC
GACATGGTCC GGGGCTCAGA CCTGGTGGTC ACTGCCATCG CCGAAGGCCG CGAAGCCGCG
CTCGGGATCC TCAACTATCT GGAATCGGCC AAAGCCTGA
 
Protein sequence
MSNDFQFIQV GRKDPTKQPI KLRATQFIEI YQPFTQPQVN EQADRCLDCG NPYCEWKCPL 
HNYIPNWLKL AKQGRIMEAA DLVHETNTLP EICGRVCPQD RLCEGACTLN DDFGAVTIGN
VEKYITDTAL AQGWRPDMSK VTPRKERVAI VGAGPAGLGC ADILARNGIK AVVFDKYPQI
GGLLTYGIPS FKLDKSVMQT RRTVLEGMGI EFRLGVTVGK DIAFADLLKD YDAVFLGMGT
YSAMKAGLPG EDADGVLQAL PYLIGNTMSL LGQQSEQNPY IDLAGKKVVV LGGGDTAMDC
VRTAVRQGAR EVTCAYRRDE ANMPGSRREV QNAREEGVNF LFNRQPVAIK TENGAVVGIE
CIETRMGEPD ANGRRSAEPV PGSEQLLEAD AIIIAFGFQP SPAPWFADFD IALDDKGRVK
ASKADDNPFQ TSNPKVFAGG DMVRGSDLVV TAIAEGREAA LGILNYLESA KA