Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0856 |
Symbol | gltD |
ID | 4603108 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 1041950 |
End bp | 1043368 |
Gene Length | 1419 bp |
Protein Length | 472 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 639780191 |
Product | glutamate synthase subunit beta |
Protein accession | YP_926733 |
Protein GI | 119773993 |
COG category | [E] Amino acid transport and metabolism [R] General function prediction only |
COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
TIGRFAM ID | [TIGR01318] glutamate synthase small subunit family protein, proteobacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.428629 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTAACG ACTTTCAGTT TATTCAGGTA GGCCGCAAAG ATCCGACCAA GCAGCCCATT AAGCTGCGTG CAACACAGTT TATTGAAATT TATCAGCCTT TTACTCAACC ACAGGTCAAC GAGCAGGCAG ACCGCTGCCT GGACTGCGGT AACCCTTACT GTGAATGGAA GTGCCCGCTG CACAATTACA TTCCCAACTG GCTGAAGCTC GCCAAACAGG GGCGCATCAT GGAAGCGGCA GATCTGGTCC ACGAGACCAA CACCCTGCCG GAAATCTGCG GCCGGGTTTG CCCCCAGGAC AGGCTCTGTG AAGGCGCCTG TACCCTGAAT GATGATTTTG GCGCCGTAAC CATAGGTAAC GTCGAGAAAT ACATCACAGA TACTGCCCTC GCCCAGGGTT GGCGCCCTGA TATGAGTAAG GTCACGCCCC GCAAAGAGCG GGTGGCGATC GTCGGTGCTG GCCCGGCGGG CCTTGGCTGC GCCGATATCC TGGCCCGCAA CGGCATCAAG GCAGTGGTGT TCGACAAATA TCCACAAATC GGCGGCCTGC TGACCTACGG TATTCCTTCA TTCAAACTGG ATAAGTCGGT GATGCAGACC CGCCGAACCG TGCTGGAGGG TATGGGCATC GAGTTTCGTC TGGGCGTTAC CGTGGGCAAG GACATCGCCT TCGCCGACCT GCTTAAAGAC TATGACGCCG TATTCCTCGG CATGGGCACC TACAGCGCCA TGAAGGCGGG GCTGCCCGGT GAAGACGCCG ACGGTGTGCT ACAGGCATTG CCCTATCTGA TTGGCAACAC CATGTCGCTG CTCGGTCAGC AAAGTGAACA GAACCCCTAT ATCGACCTGG CAGGTAAAAA AGTCGTGGTA CTGGGTGGCG GTGACACCGC CATGGACTGC GTGCGTACCG CAGTGCGCCA GGGCGCGCGC GAAGTGACCT GTGCTTACCG CCGCGATGAA GCCAACATGC CCGGCTCCCG CCGCGAGGTG CAAAACGCCC GCGAAGAAGG GGTGAACTTC CTGTTCAACC GTCAGCCTGT TGCCATCAAG ACCGAAAACG GCGCCGTGGT GGGTATCGAG TGCATCGAGA CCCGCATGGG TGAACCCGAT GCCAATGGCC GCCGCTCTGC CGAGCCCGTT CCCGGCAGCG AACAGCTCCT CGAAGCCGAT GCCATCATCA TCGCCTTTGG CTTCCAGCCA AGTCCTGCCC CCTGGTTTGC CGATTTCGAT ATCGCCCTGG ATGACAAGGG CCGGGTCAAG GCCAGCAAAG CCGATGACAA TCCATTCCAA ACCAGCAATC CCAAGGTGTT TGCCGGTGGC GACATGGTCC GGGGCTCAGA CCTGGTGGTC ACTGCCATCG CCGAAGGCCG CGAAGCCGCG CTCGGGATCC TCAACTATCT GGAATCGGCC AAAGCCTGA
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Protein sequence | MSNDFQFIQV GRKDPTKQPI KLRATQFIEI YQPFTQPQVN EQADRCLDCG NPYCEWKCPL HNYIPNWLKL AKQGRIMEAA DLVHETNTLP EICGRVCPQD RLCEGACTLN DDFGAVTIGN VEKYITDTAL AQGWRPDMSK VTPRKERVAI VGAGPAGLGC ADILARNGIK AVVFDKYPQI GGLLTYGIPS FKLDKSVMQT RRTVLEGMGI EFRLGVTVGK DIAFADLLKD YDAVFLGMGT YSAMKAGLPG EDADGVLQAL PYLIGNTMSL LGQQSEQNPY IDLAGKKVVV LGGGDTAMDC VRTAVRQGAR EVTCAYRRDE ANMPGSRREV QNAREEGVNF LFNRQPVAIK TENGAVVGIE CIETRMGEPD ANGRRSAEPV PGSEQLLEAD AIIIAFGFQP SPAPWFADFD IALDDKGRVK ASKADDNPFQ TSNPKVFAGG DMVRGSDLVV TAIAEGREAA LGILNYLESA KA
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