Gene Sama_0852 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0852 
Symbol 
ID4603104 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand- 
Start bp1039043 
End bp1039666 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content58% 
IMG OID639780187 
Producthypothetical protein 
Protein accessionYP_926729 
Protein GI119773989 
COG category[S] Function unknown 
COG ID[COG2860] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones9 
Fosmid unclonability p-value0.410151 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCTGGT TTTACTTTTT TGACCTTTGC GGCACAGCCG TGTTTGCGCT CACCGGAGCC 
CTCGCGGCAG GCAGACACAG AATGGACCCC TTTGGCGTGA CAGTGCTGGC CGCCGTTACG 
GCCGTGGGTG GCGGTACGAT TCGGGATGCC ATTATCGGTG CCACCCCGGT GTTTTGGCTG 
CGCGACCCCA ATTACCTGAT TGTCATCCTG GCAACCGTGG GTTTTACCCT GGTGTTTATC 
CGGCGCCCCC GTAAGGTGCC CCAATACACC CTGCCCATCG CCGATGCGCT GGGATTGGCA 
CTATTTACCG TGATAGGCGC CCAAAAAGCG CTCAGCCTCG GCCTTAATGG CATGTCTGCT 
GTGATCATGG GCTTGATTAC CGGCGTGGGT GGCGGCATTA TCCGGGATGT ACTCTGTCGC 
CAAATTCCCA TGGTGCTCAG AACCGAAATC TACGCAACCG CCTCCATTCT GGGTGGCATT 
GCCTATACCC TCAGCCTGCA ATTAGGCATG AACAGCCAAA CCGCTCTTTG GCTGTCGATG 
CTCAGTGCGC TGATCTTGAG GCTTGCGGCC ATTCGCTGGC ACCTTTCATT GCCGGCCTTC 
GACCTGAAAA CCCGGAGAGA CTGA
 
Protein sequence
MSWFYFFDLC GTAVFALTGA LAAGRHRMDP FGVTVLAAVT AVGGGTIRDA IIGATPVFWL 
RDPNYLIVIL ATVGFTLVFI RRPRKVPQYT LPIADALGLA LFTVIGAQKA LSLGLNGMSA 
VIMGLITGVG GGIIRDVLCR QIPMVLRTEI YATASILGGI AYTLSLQLGM NSQTALWLSM 
LSALILRLAA IRWHLSLPAF DLKTRRD