| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0839 |
|---|
| Symbol | |
|---|
| ID | 4603091 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 1023262 |
|---|
| End bp | 1024545 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639780174 |
|---|
| Product | glutamate-1-semialdehyde aminotransferase |
|---|
| Protein accession | YP_926716 |
|---|
| Protein GI | 119773976 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0001] Glutamate-1-semialdehyde aminotransferase |
|---|
| TIGRFAM ID | [TIGR00713] glutamate-1-semialdehyde-2,1-aminomutase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.926409 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGTT CCGAAACCTT GTTTGAACAG GCTAAAAAAA CCATTCCCGG TGGCGTTAAC
TCACCGGTGC GCGCCTTCAA TGGCGTGGGC GGTACCCCTC GTTTTATAGA AAAGGCCGAT
GGCGCATATA TCTATGACGC CGACGGCAAG GCCTATATCG ATTATGTGGG CTCCTGGGGC
CCAATGATTC TTGGCCACAA CCACCCATCC ATTCGCGAAG CCGTGCTTAA AGCCGTTCAC
AATGGTTTGT CTTTCGGTGC CCCCACCGAG CTTGAAGTCA TCATGGCCGA GAAGGTAATC
GAAATGGTGC CTTCCATGGA TCAGGTGCGT ATGGTGAGTT CAGGCACCGA AGCCACCATG
AGCGCCATCC GTCTGGCCCG TGGTTACACC AAGCGCGACA AAATCCTTAA GTTTGAAGGT
TGCTACCATG GCCACGCCGA CTGTCTGCTG GTAAAAGCCG GCTCTGGCGC CCTGACTCTG
GGTCAGCCAA GCTCACCCGG TATCCCGGAA GATTTCGCCA AGCACACTCT CACTGCCGTG
TATAACGACC TTGAGTCTGT ACAGTCTTTC TTCGACCAGT ATCCTGAAGA CATCGCCTGT
ATCATCATCG AGCCGGTTGC CGGCAACATG AACTGTATTC CGCCGGTTCC CGGATTTCTG
GAAGGCCTGC GCGCCCTCTG TGACAAGTAC GGTGCGCTCT TTATCATCGA TGAAGTAATG
ACGGGCTTCC GTGTATCCAG AAGCGGTGCT CAGGGCCACT ATGGCGTGAC CCCGGACCTC
ACCACCCTGG GTAAGGTGAT TGGCGGCGGC ATGCCCGTTG GCGCCTTTGG CGGCAAAAAA
GACGTGATGC AGTATCTGGC TCCTGCCGGC CCTGTGTATC AGGCAGGTAC TCTTTCGGGT
AATCCCATTG CCATGACAGC CGGTCTGGCG CAGCTCGACG CCCTTTGTGC CGATGGCCTG
TATGAAGAAC TTGCCGCCAA GACCAAGCGC ATCGCCGAAG GCTTCAAGGC CGCTGCCGAC
AAGCATGGTA TCCCGATGGC CATCAACTAT GTTGGCGGCA TGTTCGGCTT CTTCTTCACC
GATGAGCAGC ATATCACCCG TTTCGACCAG GTGACCCGCT GTAACATGGA CCACTTCCGC
GCCTTCTACC ACGGCATGCT GGACGAGGGT GTGTATCTGG CCCCAAGCGC TTATGAGGCT
GGCTTCCTGT CCATGGCCCA CGGTGACAAG GAAATCGAAG AAACCCTGGC CGCCGCTGAT
CGCGTACTGG CCCGCATGAA GTAA
|
|---|
| Protein sequence | MTRSETLFEQ AKKTIPGGVN SPVRAFNGVG GTPRFIEKAD GAYIYDADGK AYIDYVGSWG
PMILGHNHPS IREAVLKAVH NGLSFGAPTE LEVIMAEKVI EMVPSMDQVR MVSSGTEATM
SAIRLARGYT KRDKILKFEG CYHGHADCLL VKAGSGALTL GQPSSPGIPE DFAKHTLTAV
YNDLESVQSF FDQYPEDIAC IIIEPVAGNM NCIPPVPGFL EGLRALCDKY GALFIIDEVM
TGFRVSRSGA QGHYGVTPDL TTLGKVIGGG MPVGAFGGKK DVMQYLAPAG PVYQAGTLSG
NPIAMTAGLA QLDALCADGL YEELAAKTKR IAEGFKAAAD KHGIPMAINY VGGMFGFFFT
DEQHITRFDQ VTRCNMDHFR AFYHGMLDEG VYLAPSAYEA GFLSMAHGDK EIEETLAAAD
RVLARMK
|
|---|
| |