| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0809 |
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| Symbol | |
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| ID | 4603061 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 993354 |
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| End bp | 994589 |
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| Gene Length | 1236 bp |
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| Protein Length | 411 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639780143 |
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| Product | putative diguanylate phosphodiesterase |
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| Protein accession | YP_926686 |
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| Protein GI | 119773946 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGTTGA ATGTGCTCAT CATCGACGAT TCACTCAGTT ACTGCCAGCT GTTATCCAAA
TATTTCAGTG AACTGAATGT GACCAGCGTG GACTACTGCC ATGATGGTTC AGAGGCGTTG
CAGCGCCTTC GGGAGCGCAG GGACAGATAC CAGATTTTGG TGGTGGATTT ACATATGCCG
GGGATGGACG GCATTGAACT TTTATCAAAG CTGTCGGGCC TTGAATACCG GGGCGGCGTC
ATTATCGCTT CGGGGATGGA GAGCCGCATC ATAGAAGCCG CCTCTCAGAT TGTGCTTGGG
GCCCATTTGC GGCTGCTGGG CGCCTTGATG AAGCCGGTAT GTAAAACACA GCTGAACATC
TGCATAGAGC GCCTGTTGAT GATGGTGCCG GAGCTGAACA CGTCCAAACC GGCCATGACC
TTACAATCGC TTCGGGAATC CATTAAGCAA AATAAAGTGG TGCCTTACTA CCAGCCCCAG
GTGGAAGTGG GGACCGGACG CATCGAAGGG TTTGAGGTGC TTTGCCGCAT GCAGCTGGGG
GCGCAATTGC AGTTGATGAC CCCGGATCGT TTTATGGCGC TGGCCGAGCG CTACAACCTG
CTCAATGCGG TGTCTGAACA GCTGATAGGG ACAGCATTGA AGGAGTGGGC CGAAATTGGC
CTTCAGCCCG AATGCCGTCA CGCCCGCTTG TCTATCAACC TCACACCCTC CCAGCTTGGC
CAGAGTTATT GGCCCCGCCG ACTGCTGAGT TTTTGCCACA AATGGCAGGT GGATATCAGC
AGGGTGACGG TGGAAATTAC AGAAAATCAG GCGCTGGATA AGCAGTCGCA ACATTCGGGG
ATTTCCCGGC TGCGCCTGCA CAATTTTGGC GTTGCCATTG ATGATTTCGG GACAGGCTAC
ACCAACTTAA CTCAGCTGTG CCGTCTGCCA ATCAGTGAGC TTAAGCTGGA CATAAGTCTG
GTGCGCGGAA TTCACATGGA CCCATTGGCA CAGACCATTC TGAAGTCGTT GCTGGACATC
GGGCGCCAAT TGGGTGTGTC TGTGGTGGCC GAAGGCGTGG AAGACCCAAG AGACTATCGA
TACCTTGAGT CTGTTCCGGG CCTGATAGTT CAGGGCTTTT TGGTATGCAG GCCCAAGCCC
CTGGGTGAAT TGGTTCGTTG GTTGAAGGCC CGACAGCGGG TCGCCGTTGA CACTAAGGGG
CTCGAGGCAG GCTCGAGTGC GACATACCGT CATTGA
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| Protein sequence | MPLNVLIIDD SLSYCQLLSK YFSELNVTSV DYCHDGSEAL QRLRERRDRY QILVVDLHMP
GMDGIELLSK LSGLEYRGGV IIASGMESRI IEAASQIVLG AHLRLLGALM KPVCKTQLNI
CIERLLMMVP ELNTSKPAMT LQSLRESIKQ NKVVPYYQPQ VEVGTGRIEG FEVLCRMQLG
AQLQLMTPDR FMALAERYNL LNAVSEQLIG TALKEWAEIG LQPECRHARL SINLTPSQLG
QSYWPRRLLS FCHKWQVDIS RVTVEITENQ ALDKQSQHSG ISRLRLHNFG VAIDDFGTGY
TNLTQLCRLP ISELKLDISL VRGIHMDPLA QTILKSLLDI GRQLGVSVVA EGVEDPRDYR
YLESVPGLIV QGFLVCRPKP LGELVRWLKA RQRVAVDTKG LEAGSSATYR H
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