| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0783 |
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| Symbol | |
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| ID | 4603035 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 965648 |
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| End bp | 967426 |
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| Gene Length | 1779 bp |
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| Protein Length | 592 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 639780117 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_926660 |
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| Protein GI | 119773920 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCTCC GAAAGCCGTT AATGCGTAAT TTTTTAGTTG TCTTCGCATT ACTCTCGGTT
ATTGCCACAG CGGTTAACGC CGCTGATGGC ACCTTAGCGC TTTTAAGAGA GGCAGATTCT
CTTCGCTCAA GTAGTCCCAT AGAGTTTCAG GACAAACTAA AAGAGATAGA AAAGCAAGCG
GGTGCATTGA ATAACTACGA ATCAGAATAC CTGGCTTACC TACGCGCCTA TAATTTGTCA
TTTTCTGGAC AGCTGAACGA CGCATATCTC ATGTATCAAG AATTGGCCCA AAAAAGCCAA
TTCGATGAAT TTAGATTTCG AGCCTTAACT TCCATGGTCA ATACAAATGC CATTCGAAGA
GAATGGACGC TCGGCCTGGA AAATTTAAGA CAGACTATCG AAATCCTACC AACTGTCGAG
AACATTCAAC TTAAAGAGCA TGGGCTTGCC GTTGCAGCAG TGTTTTACAA CTACCTGGAG
CAACATGCTT TAGCAAAAGA ATTCGCCTTA CAATTAGCCG AGTCAACCTC GAATCAAAGA
AGCCTGTGTT TTGCACTCCA GCTTAGATTA CAAGCAGATA CAGGTTTAGG TACGATTGGT
ATCGGTGACG AACTGTTCCA AATCGCATTG CAACATTGCG AAACAATTGG TGAGTTGGTG
GTTGCGTCCG CTATCGTTTC CTACAAAGCA GAATTATTAC TAAAGGACAG CCAAGCGTCG
GAAGCCAGCC AACTATTAGA CCAATATTTG GAGCGAGTAA ACAACACTGG TTATCCACCA
ATCATAGCCA GTTTCTATAC TCTTTTAGCT GAAGCCAACC TGTTGCAAAA CAAAAAAGCT
GTTGCAGCCG AGTATGCCAC TACAGCGTTA AAGTACACTT CAAGTGCAAC CAACGCCGAG
GCTGCAATGC GTGCCAACAA GGTGCTGTTT GACTATCACA GCAGCCGCGG CAACAGTGAG
GCGGCGCTGG AGGCCTATAT CAAGTACGCC GAGGCCGACA AGGCCTATCT GGACGAGGTG
AAAACCAAGA CTCTGGCGTT TCAGTTGGCC GAGCACCAGA GTCTGGAGCA GCAAAACAAA
ATTAGCCTGC TGGATGAGCA GAATAAACTC CTGAAAGTGC AGCAGCAGTT GGATCAGGCA
CAGGCCTATA ATAGCCGCCT GCTGATTGCG GTGCTCTTTT GCATCACTCT GGGCCTGGGT
ACTTGGGGCT GGCATTCCTG GCAGAGCCAA AGACGCCTCA AGCAGCTGGC CGAATTCGAC
AGCCTCACAG GGCTGTTCAG CCGTGGCCAC TTTACCCAGG TATCCCTAAG CGCGGTGGAA
TACGCCAAAA CCCTCAATGC CCCCATCAGC TGTATCCTGC TGGATGTAGA CAAATTCAAA
CAGATTAACG ACCGTCTGGG CCATGCCACC GGCGACTGGG CACTGAAAGA AGTGGCGCGG
ATTTGCAAAG AGCAGGTGCG GGAATATGAG ATTTTTGGCC GAATCGGCGG GGAAGAGTTT
TGCCTGCTGC TGCCTGAGTG CGAACTTAAG CATGCCACCG ACCTGGCCAA TGCCATGTGT
CAGGCTCTCA GAGGCGCAGA TACCTCGGCC TCGGGGCATA AATTTGAGCT GACCGCCAGC
TTTGGGGTAA CCGACAACGC TCGGGCGGGC TATTCCCTCG ACAAGCTGAT GGCCCAGGCA
GACAAGGCCA TGTACAGCGC CAAAAAGCAG GGCCGCAATC AGGTGCAGTG CTACTCTGCC
AACCCATCCG TGGCGACAAC GCCACAGGAA GCAGGATAA
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| Protein sequence | MKLRKPLMRN FLVVFALLSV IATAVNAADG TLALLREADS LRSSSPIEFQ DKLKEIEKQA
GALNNYESEY LAYLRAYNLS FSGQLNDAYL MYQELAQKSQ FDEFRFRALT SMVNTNAIRR
EWTLGLENLR QTIEILPTVE NIQLKEHGLA VAAVFYNYLE QHALAKEFAL QLAESTSNQR
SLCFALQLRL QADTGLGTIG IGDELFQIAL QHCETIGELV VASAIVSYKA ELLLKDSQAS
EASQLLDQYL ERVNNTGYPP IIASFYTLLA EANLLQNKKA VAAEYATTAL KYTSSATNAE
AAMRANKVLF DYHSSRGNSE AALEAYIKYA EADKAYLDEV KTKTLAFQLA EHQSLEQQNK
ISLLDEQNKL LKVQQQLDQA QAYNSRLLIA VLFCITLGLG TWGWHSWQSQ RRLKQLAEFD
SLTGLFSRGH FTQVSLSAVE YAKTLNAPIS CILLDVDKFK QINDRLGHAT GDWALKEVAR
ICKEQVREYE IFGRIGGEEF CLLLPECELK HATDLANAMC QALRGADTSA SGHKFELTAS
FGVTDNARAG YSLDKLMAQA DKAMYSAKKQ GRNQVQCYSA NPSVATTPQE AG
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