| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0758 |
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| Symbol | metH |
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| ID | 4606037 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 938190 |
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| End bp | 941930 |
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| Gene Length | 3741 bp |
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| Protein Length | 1246 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 639780092 |
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| Product | B12-dependent methionine synthase |
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| Protein accession | YP_926635 |
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| Protein GI | 119773895 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.659122 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAACTC CAGTGTTATC CCAGGCGACC AAGGCGCTTG CCCAGAGCCG TCAACAGCGA
CTGAACGAGG ATCTCTCCAC CCGCATTCTT ATCCTCGACG GCGCCATGGG AACCATGATC
CAGGGCCACA AACTGGAGGA AGAACACTAC CGCGGCAGCC GCTTTGCCGA CTGGCACTGC
GACGTTAAAG GCAATAACGA CCTCCTGGTA CTCACCCAGC CAGAGATAAT CAAGGGCATC
CACCGCGAGT ATCTGCTGGC CGGTGCCGAT ATCATCGAAA CCAACACCTT TAACGCCACC
ACTGTGGCCA TGGCCGACTA CGACATGCAG TCGCTCTCGG CCGAGATAAA CCTTGTTGGT
GCCCGCATCG CCCGTGAAGT GGCCGATGAA GTGGAGGCCC AAACCGGCAT CCCCCGCTAT
GTGGCCGGGG TACTTGGCCC CACCAACCGC ACCTGCTCCA TCAGCCCGGA TGTGAATGAC
CCGGGCTACC GCAATATCCA CTTCGATGAT CTGGTAACCG CCTACCGCGA GTCCACCGCA
GCCCTGATTG AAGGCGGCGC CGATATCATC ATGGTGGAAA CCATTTTCGA TACCCTGAAC
GCCAAGGCGG CGCTGTTTGC CATCGAATCC ATCTTCGATG AGGTTGGTCT GCGCCTGCCG
GTGATGATTT CCGGCACCAT TACCGATGCC TCCGGCCGCA CCCTGACCGG CCAGACCACC
GAAGCCTTTT ACAATTCGCT GCGCCATATC AAGCCCATCA GCATGGGCCT TAACTGTGCC
CTGGGGCCAA AAGAACTGCG CCCCTACGTG GAAGAACTCT CGCGCATCAG CGAATGCTAT
GTGTCGGCCC ACCCCAACGC CGGTCTGCCG AACGAGTTCG GTGGCTACGA TGAAACGCCA
AAAGAAATGG CCGACATCAT AGTGCAGTGG GCCATCGAAG GCATGCTCAA CATAGTCGGC
GGCTGCTGCG GCACCACCCC GGACCATATC CGGGTTATCC GCGAAGCCGT TGAAAAGCAC
GCGCCGCGCA AGCTGCCTGA GCTGCCGGTG GCCTGCCGTC TGGCTGGGCT TGAACCGCTC
ACCATCAGTG CCGACAGTCT CTTTGTAAAC GTGGGTGAGC GCACCAACGT CACTGGCTCA
GCCAAATTCC TGAAGCTGAT TAAAGAAGGC CAATACGAGA CCGCGCTGGA TGTGGCCCGG
GATCAGGTGG AAAACGGCGC CCAAATCATC GACATCAACA TGGATGAGGG CATGCTGGAC
GGCGAAGAGG TGATGACCAC CTTTTTGAAT CTGGTCGCCT CCGAGCCTGA AATCAGCAAG
GTGCCCATCA TGATTGACTC CTCCAAGTGG GAAGTCATCG AGGCAGGCCT TAAGTGCGTG
CAGGGCAAGT GCATCGTTAA CTCCATCTCC CTCAAAGAAG GTGAAGCCAA GTTTATCGAG
CAGGCCACCC TTGTGAAGCG CTACGGCGCC GCCGCCATCA TCATGGCCTT CGATGAAACC
GGCCAGGCCG ACACCCGCGC CCGTAAAATT GAAATCTGTA CCCGCGCCTA CCGCATTCTG
GTCGATAAAG TCGGCTTCCC GCCGGAAGAC ATTATCTTCG ACCCCAACAT TTTTGCCGTG
GCTACCGGCA TCGAAGAGCA CGACAACTAC GCGGTGGACT TTATCGAGGC GGTGCGCGAC
ATCAAGGCCA CCCTGCCCCA TGCGATGATT TCCGGCGGCG TGTCCAACGT GTCCTTCTCG
TTCCGTGGCA ACAACCCGGT GCGCGAGGCC ATCCACGCCG TGTTCCTCTA CCATGCCATC
AAAGAAGGCA TGGACATGGG CATTGTGAAT GCGGGGCAAC TGGCGATTTA CGATGACATT
CCGGCCGAGC TTAAAGAGCG GGTCGAGGCC GTGGTGCTTA ACCTGCCCTG CCCGGTGGAA
GACTCTACCA ACACAGAGCA ACTGCTTGAG ATTGCTGAAA AGTATCGCGG CGGAGGTGGC
AGCGGCGCCG GTAAAAAAGA AGATTTGCAG TGGCGCAGCC TGCCGGTGAA CAAGCGCCTT
GAGCATGCGC TGGTAAAAGG CATTACCGAA TTTATCGACG CCGACACCGA AGAGGCCCGT
CAGCAGGCCA CCCGTCCGCT GGATGTGATT GAAGGCCCGC TGATGGACGG CATGAACGTG
GTGGGCGATC TCTTTGGCGA GGGCAAGATG TTCCTGCCCC AGGTGGTTAA ATCCGCCCGG
GTGATGAAAA AGGCCGTGGC CTACTTAAAC CCCTTTATCG AGGCCGAAAA GGTCGCCGGC
CAGAGCAACG GCAAGGTGCT GATGGTCACG GTAAAAGGCG ACGTGCACGA CATCGGCAAA
AACATTGTTG GCGTGGTGCT CGCCTGTAAC GGCTATGAGG TGATTGACCT GGGCGTTATG
GTGCCGGTGG AGAAAATCGT CGAAGTCGCC AAAAAAGAGC AGGTCGACAT TATCGGCATG
TCGGGGCTCA TTACCCCAAG CCTCGATGAA ATGGTGCATA ACGTCAAAAC CTTCGAGCGT
GAAGGCCTGA CCTTGCCCGC CATTATCGGC GGCGCCACCT GCTCGAAAAT CCATACCGCG
GTCAAGATTG CGCCCCACTA CCCCCACGGC GCGATTTATA TTCCCGATGC GTCCCGCGCC
GTGCCCATGG TGAGCAAGCT TATCAACGAA GAGACCCGCG CCGCTACCAT CAAGGCCACC
TACGATGAAT ACGATGTGAT GCGCGAAAAA CGCCTGTCAC AGGCCAAGCG CAAAGAGATA
ATCTCCATCG AGGCGGCGCG TGAAAACCGC TGCCAGCTCG ACTGGGCCAA CTACCAGCCC
AAGGTGCCGA ATAAGCTGGG TATTCAGGTG TTTGAAGACT ACCCGCTGGA TGATTTGGTC
GATCGCATCG ACTGGACACC GTTTTTCCGC GCCTGGGAAC TGCACGGCCA CTTCCCGCGC
ATTCTCGAAG ACGAAGTGGT AGGCGAAGAA GCCCGTAAAC TCTTTGCCGA TGCCAAGGCC
ATGCTGCAAA CCATCATCGA TGAAAAGTGG CTCACCGCCA AAGGCGTGAT TGGCCTGTTC
CCGGCCAATA CCGTAAACCA TGACGATATC GAGCTTTACA CTGACGAGAG CCGCTCCCAA
GTACTGATGA CCACCCATCA TTTGCGGATG CAAATCGAGC GGGTGGGCAA CGATAACTTC
TGTCTGTCGG ACTTTGTTGC CCCCAAAGAC AGTGGTGTGG TCGACTACAC AGGCGGCTTT
GCGGTGTGCG CAGGCCACGG CATCGATGAG CATCTGGCAC GCTTCGAAGC CAACCACGAC
GACTACAACG CCATCATGCT CAAGGTACTG GCCGACCGTC TGGCCGAGGC CTTCGCCGAG
CGCATGCATG AGCGGGTACG TAAAGAGTTC TGGGGTTACG CAAGCGATGA AAACCTCGAC
AACGAGGCGC TTATCCGCGA GAAATACCGC GGCATCCGCC CCGCCCCCGG CTACCCCGCC
TGCCCGGATC ACACCGAGAA GGGGCTCTTG TGGGATTTGC TCAAGCCCAA CGAGTGCATT
GACCTTAATA TCACCGAAAG CTTTGCCATG TACCCCACAG CGGCCGTCAG CGGCTGGTAC
TTCGCCCACC CCGAGGCACG CTACTTTGGC GTGACTAATA TCGGCAGGGA TCAGGTGGAA
GACTACGCCC GTCGTAAGGG GATGACGGTT GCTGAAACGG AGAAGTGGCT GGCACCGATT
TTGGATTACG ATCCTGAGTA A
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| Protein sequence | MATPVLSQAT KALAQSRQQR LNEDLSTRIL ILDGAMGTMI QGHKLEEEHY RGSRFADWHC
DVKGNNDLLV LTQPEIIKGI HREYLLAGAD IIETNTFNAT TVAMADYDMQ SLSAEINLVG
ARIAREVADE VEAQTGIPRY VAGVLGPTNR TCSISPDVND PGYRNIHFDD LVTAYRESTA
ALIEGGADII MVETIFDTLN AKAALFAIES IFDEVGLRLP VMISGTITDA SGRTLTGQTT
EAFYNSLRHI KPISMGLNCA LGPKELRPYV EELSRISECY VSAHPNAGLP NEFGGYDETP
KEMADIIVQW AIEGMLNIVG GCCGTTPDHI RVIREAVEKH APRKLPELPV ACRLAGLEPL
TISADSLFVN VGERTNVTGS AKFLKLIKEG QYETALDVAR DQVENGAQII DINMDEGMLD
GEEVMTTFLN LVASEPEISK VPIMIDSSKW EVIEAGLKCV QGKCIVNSIS LKEGEAKFIE
QATLVKRYGA AAIIMAFDET GQADTRARKI EICTRAYRIL VDKVGFPPED IIFDPNIFAV
ATGIEEHDNY AVDFIEAVRD IKATLPHAMI SGGVSNVSFS FRGNNPVREA IHAVFLYHAI
KEGMDMGIVN AGQLAIYDDI PAELKERVEA VVLNLPCPVE DSTNTEQLLE IAEKYRGGGG
SGAGKKEDLQ WRSLPVNKRL EHALVKGITE FIDADTEEAR QQATRPLDVI EGPLMDGMNV
VGDLFGEGKM FLPQVVKSAR VMKKAVAYLN PFIEAEKVAG QSNGKVLMVT VKGDVHDIGK
NIVGVVLACN GYEVIDLGVM VPVEKIVEVA KKEQVDIIGM SGLITPSLDE MVHNVKTFER
EGLTLPAIIG GATCSKIHTA VKIAPHYPHG AIYIPDASRA VPMVSKLINE ETRAATIKAT
YDEYDVMREK RLSQAKRKEI ISIEAARENR CQLDWANYQP KVPNKLGIQV FEDYPLDDLV
DRIDWTPFFR AWELHGHFPR ILEDEVVGEE ARKLFADAKA MLQTIIDEKW LTAKGVIGLF
PANTVNHDDI ELYTDESRSQ VLMTTHHLRM QIERVGNDNF CLSDFVAPKD SGVVDYTGGF
AVCAGHGIDE HLARFEANHD DYNAIMLKVL ADRLAEAFAE RMHERVRKEF WGYASDENLD
NEALIREKYR GIRPAPGYPA CPDHTEKGLL WDLLKPNECI DLNITESFAM YPTAAVSGWY
FAHPEARYFG VTNIGRDQVE DYARRKGMTV AETEKWLAPI LDYDPE
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