Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0752 |
Symbol | |
ID | 4603005 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 927691 |
End bp | 929094 |
Gene Length | 1404 bp |
Protein Length | 467 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 639780087 |
Product | ATP-dependent RNA helicase DbpA |
Protein accession | YP_926630 |
Protein GI | 119773890 |
COG category | [J] Translation, ribosomal structure and biogenesis [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG0513] Superfamily II DNA and RNA helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.748703 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAGCACTT CAGATACCCA GCCTTCACTG GCTTTTTCCA CCCTTAAGCT TAAAACCGAA CTGCTTGAGA ACCTGTCCTC CATGGGCTAC CACGAGATGA CGCCCATTCA GGCACAGAGC TTGCCAGCCA TTCTGGCGGG TGAGGATGTG ATTGGTCAGG GCAAAACCGG CTCGGGTAAA ACCGCGGCCT TTGGTCTGGG GTTACTGAAT AAGCTGGATG TGAAGCGTTT TCGCATTCAA ACCCTGGTGC TGTGCCCTAC CCGGGAACTG GCCGACCAGG TGGCGCAGGA AATCCGCACC CTCGCCCGCG GTATCCACAA TGTAAAAGTA CTGACCCTCT GCGGCGGCGT ACCCATGGGA CCACAGGTGG GCTCGCTGGA GCATGGCGCC CACATTATCG TTGGTACGCC GGGGCGGATT GTCGATCACC TTGAGCGTGA CCGCCTCGAT TTGAGCAACC TCAATATGCT GGTGCTCGAT GAAGCCGACC GCATGCTGGA AATGGGCTTT CAGCCGCAGC TCGATGCCAT TATTGCCAGA AGCCCGAGGG AGCGTCAGAC CCTGCTGTTC AGCGCCACCT TCCCCGAGCA GATTCAAACC ATTGCCCAGC AGGTGATGTA CAACCCTGTG ATGGTGAAAG TAGCCACAAC CCACGAAAAG AGCACCATAG CCCAGCACTT CTACCATTTG GAAGACGACG GCGCGCGGAT GCAGGCGCTG CAATTGTTGC TGCTCGAGCA CAAGCCCGAG AGCGCGGTGG TGTTCTGTAA CACCAAGCGC GAAACCCAGA AGGTGGCCGA TGACCTTACT GCTGCAGGTT TCAGCGTACT GGCGCTCCAT GGCGACCTGG AGCAACGCGA CAGAGACGAA ACCCTGCTGC AATTTGCCAA CAAGAGCGCC TGCGTGCTGG TCGCCACCGA CGTGGCCGCC CGAGGTTTGG ATATCGACGC CCTCGATGCA GTATTCAACT ACCACGTGGC CCACGATACC GAGGTACACA TTCACCGCAT TGGCCGCACC GGCCGTGCGG GCAGCAAAGG GGCCGCCTAT ACCTTCTTCA ACGACAAAGA CGGCTACAAG ATAGCCTTGC TGGAAGAGTA CCTGGAGCGC GACATTCAAA GTGAGCCACT GCCGTCAGCA AGCCTCCTTG GCAGCATGCC TTTGGCGCCT GCCATGATCA CCCTGCAAAT CGACGGCGGC AAAAAGGATA AGCTGCGCCC CGGCGATATT CTTGGCGCCC TCACCGGTGA CAAGGGTATT GAAGGTGCCC AGGTGGGTAA GATTCTGGTG ACAGACTACC GTGCTTACGT AGCCGTTGAT CGCAAGGTGG CTAAAAAGGC GCTGGGTAAA ATCACCTCCG GCCGCATTAA GGGCAAGTCT TACCGAGCCT GGCTGATGAA GTAA
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Protein sequence | MSTSDTQPSL AFSTLKLKTE LLENLSSMGY HEMTPIQAQS LPAILAGEDV IGQGKTGSGK TAAFGLGLLN KLDVKRFRIQ TLVLCPTREL ADQVAQEIRT LARGIHNVKV LTLCGGVPMG PQVGSLEHGA HIIVGTPGRI VDHLERDRLD LSNLNMLVLD EADRMLEMGF QPQLDAIIAR SPRERQTLLF SATFPEQIQT IAQQVMYNPV MVKVATTHEK STIAQHFYHL EDDGARMQAL QLLLLEHKPE SAVVFCNTKR ETQKVADDLT AAGFSVLALH GDLEQRDRDE TLLQFANKSA CVLVATDVAA RGLDIDALDA VFNYHVAHDT EVHIHRIGRT GRAGSKGAAY TFFNDKDGYK IALLEEYLER DIQSEPLPSA SLLGSMPLAP AMITLQIDGG KKDKLRPGDI LGALTGDKGI EGAQVGKILV TDYRAYVAVD RKVAKKALGK ITSGRIKGKS YRAWLMK
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