| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0710 |
|---|
| Symbol | |
|---|
| ID | 4602963 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 872846 |
|---|
| End bp | 873709 |
|---|
| Gene Length | 864 bp |
|---|
| Protein Length | 287 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639780045 |
|---|
| Product | putative type II secretion system protein F |
|---|
| Protein accession | YP_926588 |
|---|
| Protein GI | 119773848 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4965] Flp pilus assembly protein TadB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTAATC TGATTGTGAC CTTTTACACC CTGGCGCTGA TTTTTTTGCT GGTGTCCTGC
GCCCGCATTT ACCGGCGGGT ACCCGAAGAG CGCCGGGAGT TTATGGACCC CCTCACCCCC
GGGCTCAAGC TGATTTGGCC GTTGGTGAAT GTGGTGGCCT TTTACTTCAG CGAAAAGCTC
AGCGTGGACT ATCTGGAGCG TATCGCCAAA AAACTGCAGG TATCCGGTTT ATCGTACCTG
ATGACGGCAG AGCAATACTT TGCCATCCGC ATCCTGAGCA CCCTGTTTGC CACCTTTATT
GTGTGGCTGG GTTGTTGGAT GCTGGACGAA CTATCGGCCA ACTACCTGCT GCTGGCCGCC
ATCGCCGGTT ACTTTTTGCC CATGCTGACC CTGAACGATC TACGCCGTAC GCGTCAGGAG
CAAATCGTCA AGGTGCTGCC GGTGTACCTC GACTATCTGA CCATGGCCAT TGAGGCCGGA
CTCAACATGT CTGCAGCCAT TGCCCAGGCG GTGGAACGCG GCCCCGATGG GCCGCTGAAA
ATCGAGTTTG AAAAGGTGAT CCGCGATATG CGTGCGGGTA TCTCCCGGGC ACAGGCATTT
CGCAACATGG CCGACCGGGT CCAGATAAGT GAGCTTAACA GTCTGGTCAG TGCGCTGGCA
CAGGCAGAAC GTACCGGGGC GAGTCTGGGT TACACCCTGC GGATCCAGGC CGATCAGCGC
CGGGTGGAAC GTTTCCAGCG CGCCGAGAAA AAGGCCATGG AAGCGCCCAT CAAACTGATG
TTCCCCCTTA TCATGTTTAT CTTCCCGGTG ACCTTTTTGA TCCTCTTGTT CCCCATCCTG
TCCAAGTTCC TGTTTGAGAT GTGA
|
|---|
| Protein sequence | MVNLIVTFYT LALIFLLVSC ARIYRRVPEE RREFMDPLTP GLKLIWPLVN VVAFYFSEKL
SVDYLERIAK KLQVSGLSYL MTAEQYFAIR ILSTLFATFI VWLGCWMLDE LSANYLLLAA
IAGYFLPMLT LNDLRRTRQE QIVKVLPVYL DYLTMAIEAG LNMSAAIAQA VERGPDGPLK
IEFEKVIRDM RAGISRAQAF RNMADRVQIS ELNSLVSALA QAERTGASLG YTLRIQADQR
RVERFQRAEK KAMEAPIKLM FPLIMFIFPV TFLILLFPIL SKFLFEM
|
|---|
| |