| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0708 |
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| Symbol | |
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| ID | 4602961 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 870224 |
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| End bp | 871993 |
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| Gene Length | 1770 bp |
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| Protein Length | 589 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639780043 |
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| Product | type II/IV secretion system protein E |
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| Protein accession | YP_926586 |
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| Protein GI | 119773846 |
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| COG category | [T] Signal transduction mechanisms
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1716] FOG: FHA domain
[COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.844285 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTAACA TCATCGTCAG TACGACCAAG GGAACCAAGG TCGGTGAATT CAACTGTATT
CACCGTGAGT GCCATATCGG TAAGGACCCG GGGCACCTGA TTGTGCTTCG GGGCATTAAG
GTGGCCCGTC ATCACGCTAC ACTGCGCCGG GAAGATGACG GCATTTTCAT CGAAGACAAC
CGCAGCATGA CAGGCCTGAG GGTAAACGAG CAGCGGGAGA AGCTGTTTGG CCCCCTCAAA
TACACGGATA AAATCCAGAT TGGGGATTAT TTTATTCGGG TGCAGGACTC AGACAGCGGC
AGCGGATTCA CCACCGAATC AGCGGCGCCT GATACCACTC CGGCTGGCAC CAATGCCACA
GACGTGCCTG CTCATCCTGC CGACGCGTCA TTATCAAGTG TCAGCGCGCA ATTAAGCGTC
AGTGCGCTCC CGGGCGCCGT TGCCACCGGA AAAGCTAAAC CACCCGAAGC GCAAACGCCC
GAGCGTGAGC AAATTAAGTT GCGCAACCAC TGGCGCCGTC AGGTGCACAG GGAACTCTTA
AAACAGTTCG ATTTGCGTCG GGTAAATGTC AATGAAATGA GTGATATAGA GCTTCGTGAA
CAGAGTGAAG CCCTGATATT GCACATAGTC GGCCAAATGG CCTTGCCCGA GACCATTGCC
GCCACCGACC TTATCCGCGA AGTGCTGGAT GAGACCATAG GTCTTGGGCC CCTTGAGGCC
CTGATTGCTG ACGCAGATGT CACAGAAATC ATGGTCAACA GCCACGACCA AATCTTCTTC
GAGAAGTCCG GGCAATTGTA TTTGTCTGAT ATTTCCTTCT CTGACGATCA GGCGGTGCTG
GGGGCCATCG AGCGCATCGT GGCCCCCATT GGCCGGCGTA TCGACGAAGG CTCGCCCATG
GTGGATGCCC GTTTGAAGGA CGGCTCGCGG GTAAACGCCG TGATCCCGCC GCTGGCACTC
AAGGGCCCCT GTATCACCAT CCGTAAATTT ATGCAGCGTC GTCTGGGTGC CAGCGACCTG
GTTGGCTTTG GTTCCATGAG TCAGCACATG GCGGACTTCC TGGAAATGGC GGTGAAGCAG
AAGTGCAATG TGGTGATATC CGGCGGTACC GGCTCGGGTA AAACCACCTT GCTCAACGTG
CTGTCGAATT TTATCCCGGA AGATGAGCGC ATCATTACCG TGGAGGATGC GGCAGAGCTC
AGGTTGTATC AGCCCAACCT GGTTTCCCTG GAAGCGCGTC CGCCCAACCA GGAAGGCAAG
GGTGCCATTG AGATTCGCGA TCTGGTGAAA AACTGTTTGC GGATGCGCCC CGACCGGGTG
GTGATTGGTG AGTGCCGCGG CGGTGAGGCG CTGGACATGC TGCAGGCCAT GAACACCGGT
CACGACGGTT CTCTGACCAC GGCCCACTCC AACTCCCCCA GGGACTGTAT TTCGCGCCTG
GAGGTGATGG TGATGATGTC GGGTATGGAC CTGCCCATTC AGGCCATTCG CGAACAAATT
GCCTCTGCGG TCAATATCAT AGTGCAGCAA TCGCGCTTCT CAGATGGTTC GAGGCGTATC
ACCAGCATCT GTGAAGTCAC CGGGATGGAA GGCAGTACTG TGCAGCTGTC AGAAATATTT
AAGTTTCAGC AGACCGGCTT CAGTGAGCAG GGCAAGGTGA TGGGGTTTTA TACCGCCACA
GGTACCATTC CCGAGTTTTA CGAGTCTCTG CGCCGACGGG GAGTGCGGGT TCAGTTGGAT
ATCTTCGACA GGGATGCGCG TTATGGGTGA
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| Protein sequence | MFNIIVSTTK GTKVGEFNCI HRECHIGKDP GHLIVLRGIK VARHHATLRR EDDGIFIEDN
RSMTGLRVNE QREKLFGPLK YTDKIQIGDY FIRVQDSDSG SGFTTESAAP DTTPAGTNAT
DVPAHPADAS LSSVSAQLSV SALPGAVATG KAKPPEAQTP EREQIKLRNH WRRQVHRELL
KQFDLRRVNV NEMSDIELRE QSEALILHIV GQMALPETIA ATDLIREVLD ETIGLGPLEA
LIADADVTEI MVNSHDQIFF EKSGQLYLSD ISFSDDQAVL GAIERIVAPI GRRIDEGSPM
VDARLKDGSR VNAVIPPLAL KGPCITIRKF MQRRLGASDL VGFGSMSQHM ADFLEMAVKQ
KCNVVISGGT GSGKTTLLNV LSNFIPEDER IITVEDAAEL RLYQPNLVSL EARPPNQEGK
GAIEIRDLVK NCLRMRPDRV VIGECRGGEA LDMLQAMNTG HDGSLTTAHS NSPRDCISRL
EVMVMMSGMD LPIQAIREQI ASAVNIIVQQ SRFSDGSRRI TSICEVTGME GSTVQLSEIF
KFQQTGFSEQ GKVMGFYTAT GTIPEFYESL RRRGVRVQLD IFDRDARYG
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