| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0707 |
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| Symbol | |
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| ID | 4602960 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 868944 |
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| End bp | 870215 |
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| Gene Length | 1272 bp |
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| Protein Length | 423 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639780042 |
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| Product | putative type II and III secretion system outermembrane protein, secretin |
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| Protein accession | YP_926585 |
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| Protein GI | 119773845 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.848525 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGATGCTTT CGGTCGCTTA TGCTCATAAC AATCAACCGC TTAAGCTTTA TGTCGGCGCG
GTAGAACTCT ATAAGATTGC CAACGTTGAG CGGGTTGTGG TGGGTAACGG TGGCGTGCTC
AGTGCCAAGG TATTGGACGA GAAGAATGTG ATTCTTATCG GCGAGAGCGA AGGCTTGTCT
GATATTCAGC TTTGGCAAAA AGACGGCACC GTGCGCAAGT TAAGCGTGGT GGTCACCAAA
GAAAACGCCC AGACCACAGT GGGTACCATG AAGCGGATGC TGGCCGAGTT TCCGTCCATT
GAAGTGACAG AGTCGGACGG CGTGATAGTG ATCCACGGTG AGGCCGATGC CTCCCAGCGT
GAAACTCTGG AAAAGGTGCT GGATGGCAAG GACAACATTC TGCCACTCAT CAAATACGTC
AAATACGGTA AATCCATCGA GCCCATGGTG AAGATGGAAG TCAAAATCGT TGAGTTCAAC
AAATCCACCC TGAACAACAT TGGGGTGCAA TGGGAAAATG TGATGTCGGG TCCCGCCTTT
GGGGCCGCCA AGGCATTTAC CGCCAACCCG ATTTTCAGCG TGTCGTCGCC CGGCCAATAT
GCCAACAGCA TAGGCGGCGC CGTGTCCGAT GCCATTGGCG TTCTGGATAC CCGAGGCTGG
AGTTACTTTG GCATAGTGAC AGGTATCGGC TCTCAAATTC AGTTGCTGGC TGAGAAGGGC
GATGCCCGCA TGCTGGCCGA GCCCAATCTG ACCACCCGCA GCGGCGAAGC CGCAAGTTTC
CTCGCCGGGG GCGAGATCCC CATCCGCACC GTGAGCGGAG TGGGCTCGGT AGATATCCAG
TACAAGGAAT ACGGCATACG TTTGAACATA GAGCCCGTGG TGGATGCCGA TAACAATATC
GTCAGCCGGG TGATGGCCGA GGTGAGCGCC GTCGACCCTT CCATCCAGCT CGAGGGCAGT
GCCCCCGGCT TTCTGACCCG TCGTACCGAG TCTGTGATTA ACGTTAAAAA CAAGCAAACC
ATGGTGATTT CCGGGCTGGT TAACAGCGAA ATGTCCAAGG TGGTCAATAA GTTTCCATTG
CTGGGTGACA TCCCCATTCT GGGTGAACTC TTCAAGTCCC GTAATTTCCG TGAGGAAAAA
ACCGAGCTGG TGATTTTTGT GACCCCGACC GTGGTGTATC CCGGGGAAGA CAGCCATGAG
AAGTCCCTCT CCCGCGCCCG GGAGCTGGTT GACGATGCGG CGAAACTGGA AGCCTTTTAC
ATTCTGGATT AG
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| Protein sequence | MMLSVAYAHN NQPLKLYVGA VELYKIANVE RVVVGNGGVL SAKVLDEKNV ILIGESEGLS
DIQLWQKDGT VRKLSVVVTK ENAQTTVGTM KRMLAEFPSI EVTESDGVIV IHGEADASQR
ETLEKVLDGK DNILPLIKYV KYGKSIEPMV KMEVKIVEFN KSTLNNIGVQ WENVMSGPAF
GAAKAFTANP IFSVSSPGQY ANSIGGAVSD AIGVLDTRGW SYFGIVTGIG SQIQLLAEKG
DARMLAEPNL TTRSGEAASF LAGGEIPIRT VSGVGSVDIQ YKEYGIRLNI EPVVDADNNI
VSRVMAEVSA VDPSIQLEGS APGFLTRRTE SVINVKNKQT MVISGLVNSE MSKVVNKFPL
LGDIPILGEL FKSRNFREEK TELVIFVTPT VVYPGEDSHE KSLSRARELV DDAAKLEAFY
ILD
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