| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0679 |
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| Symbol | |
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| ID | 4602932 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 838103 |
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| End bp | 841132 |
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| Gene Length | 3030 bp |
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| Protein Length | 1009 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639780014 |
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| Product | putative TonB-dependent receptor |
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| Protein accession | YP_926557 |
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| Protein GI | 119773817 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAGA CCATTCTGAC ATTGGCCATT CAGGCTGCGG TCTTGGGCGG CGTGTCCATG
ACAGCAGTGG CGGCCGACGA GGTTGAGGTT TCCCAGGTTA AAGGAAATCA GCCCCAGCAA
AGCGCTGAAA CCGAGCAGCA AACCATTGAA AAAATTTCCG TCACTGGCTC ACGCATCAAG
CGTGACAGTT TTTCCGTTGC CACACCCCTG GCAACTCTGG ACAAGGGCGC CATCGAAGAT
GCTGGTATTG GCTCCCTGGC GGCCATTCTG GTGGATGAAC TGCCACAGGT AGCAGAGGGC
GTCAGCAACG CCAACTCCCA ATCCAGTGTA CAAAACACGG GTCTGTCCAC CATTGACCTG
CGTAATCTGG GCACTAACCG TACCCTGACG CTGATCGATG GCCGCCGCGT GGTGTCAAAC
AGCTATTCAG GCAACTACGT AAGCCTTTCC ACCATTCCCA GTACCTTTGT CGACAAGGTG
GAAATTATCA CCGGTGGTGC GTCGGCGACC TACGGTTCTG ACGCTGTGGC CGGTGTGGTC
AACATTATCA CCCAGCAAGA TCAACAGGGT GCCAAGTTCA ACGTCCGCGG CGGTACCACC
GAAAAAGGTG GTGAAGAGAT GAGTGTCGAT GGCGACTTCG GCACCCTGTA CGCCGATGGT
AAGGGTTATC TGTTTATGGC CGCTTCTTAC ACCAAGGAGT TCGGCCTGGA CTACTGGGAC
AGAAACCGTG CCCAACAGCA GGAATCCTGG TCTTACGATG ACAAGCGTAT GTGCAATACC
ATGCTGACCG ACACATACGA TACCGCGCTG AAAACCAATG CCCAGTGCAT GCGGGATATC
ACCCAGGCAG ATTGGCGTGA TCTTAACGAC TCTATTCCCG GCGGCGTATT CAACGAAGCC
AGCAGTCTGC GCCCGAACGC CGGCTTTTGG TATGACGGCC AGACCCTCCG TGATGACTGG
CACGAAGAAA AGTACGGTAT CCATTTTGCA CAATATGACT GGCTGAAAGT GCCTGAAGAC
ACGGTCGCCG CAGCAGTGAA AACCGAGTAT GACTTCGATT CCGGTGTGCA GGCCTATTTC
CAGCTGCAAT ATAGCCGCAA CCACTCTGAA AACCCCAAGT CGCCAGAAAG CTCTGATGAG
AATGAATTTG CACTGGTCCG TAACCCAGCC ACCGGCGAGT TTGTTGAAGA GTACGTGGGC
CGTATTCCGA AAAACAACCC CTTCGTTCCT CAGGAAATTT TTGACGGCGC CAGTTCCCGT
GGTATCACCT GGGACAGAAA CTTCGCCGAA GTGGGCGCCA TCGTTAACGA AAACACCCGC
ACCACCTATC GCAGCTGGGC TGGCCTCAGG GGTTTTGTGT GGGATAACTG GGAATGGGAT
TTGTCGGTGG GCTACGGCAA GTTCAAGCAG GAGCAAAATC GCCAGAACGA AATCGATGTG
CTGAAGCTGC GCGATGCCTT GCAGGCAGAG AAACTCGCCG ATGGCACTAT TCAGTGTATC
GATGCCGATG CCCGCGCCGA AGGTTGTGTG CCCGTAAACC TGTTCGGTGA AGGCTCCATC
AGTGCCGACG CTGCTGACTA TATCCGCGCC AACCCAACCA TTACCACAGA TATCAGCATG
ACCAACGTGC TGGGTTATGT CACTGGCGAT TTATTTGAGC TGCCAGCCGG CCCGGTGGCA
TCCGCCTTTG GTTTTGAGTA TCGCCGCGAC ACCCAAAGCG TTGACACCAA CGTGCCGAAC
GGTGGTGTAA CCTTCAACTA TGTCCCCACC TTTGAAGGCG ATGTTGATGT CTATGAAGCC
TTCGGGGAAG TGTCCCTGCC GCTGCTGCGT GACATGACTG GGGTACGTAA TCTGTCGATG
GATCTGTCGC TGAGGGTGGC AGATTACAGC TGGTCTACTA CAGATCTGAT GAAGAGCTAT
AAGGCCGGTA TCGTGTATGA GCCCGCCGAG GGATATATGA TCCGCGCCAA CTGGGCAACG
GCCCAGCGTG CCCCCACCAT TACCGAACTC CTGTCGCCTC CACGGGGTGA TTACGACGGC
TTCGATGATA TTTGTGATGG TGTGACGGCC ACTTCCACCG GTCCTGGCCA TGACAACTGC
CGCCTTGAGC CGGGTATTGC CGCAGCCATT GCCGCCGATG GTGTGTTTAA CGACGAAAAC
AATGGTTATT CACCCAACGT AGGTAATCCT GAACTGCAGG AAGAGTCGGC TGAGACCTTC
ACCGTGGGTG TCTCAATGGC TCCTTCTTTC ATCGACGGGC TGCGTGTTGC CATCGACTAC
TATGACATCT CAATTGAAGA TGCCATGACC AGTCTGGGCA ATGAAGACAT CATCGGCTTC
TGTTATGCCT CGTCCTTGCC CTATGGGGGT GACAACCCCT TCTGTAACGA CGTGAAACGC
GACGGTGAAG GCCAAATAAT CGAAGTGCAG CAGCGGGTTA TCAACGCAGA TGAAACCAAT
ACCAGTGGTT ACGATCTGGC GTTGGATTAC CGCTACGATC TGGATGGTTT GGGCTCGCTG
AAACTGAAGC TCGACTGGAG TCATGTGCTC GATTACAGCA TTACGGCAAC CGGCCCCGAT
GGCCAGTTTA CCGACAGCTA CGTAGGACTG CTGTCTTCGG GTATCTTCGA AGACAAGGCC
TCCGCATCCC TGAGCTGGCA TCTGGAAGAC CTGCGCATTC GCTGGAGCGT CAAGTACAAG
AGCAGTGTGC GTCGTAGCCA GTCTGCCCAT GAAGATTGGG AAAAGGACAT CGCGGCCAAT
GCTGAAAACT GTGCTTCCGG CAGTGCCAGC TGTGTTGAGA ACCCAGAGCC GCTCTGGGGC
AATGAGCTGC CTTCCGTGAC AACCCACAAC TTGTCGGCGT CTTACAGCTT CGATGTGGGA
CAGGATACCC AGGTTCGTCT GTCAGGTGGC ATCAACAACC TGTTTGATGA AAAAGGCCCA
TTCGTGATTG GTGGCAGCGG TAACTACAAC AGCCTTTACG GCGGTGGTGT AGGCCGTTAC
TACTACCTGG GTGCCGAGCT GAAGTTCTAA
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| Protein sequence | MKKTILTLAI QAAVLGGVSM TAVAADEVEV SQVKGNQPQQ SAETEQQTIE KISVTGSRIK
RDSFSVATPL ATLDKGAIED AGIGSLAAIL VDELPQVAEG VSNANSQSSV QNTGLSTIDL
RNLGTNRTLT LIDGRRVVSN SYSGNYVSLS TIPSTFVDKV EIITGGASAT YGSDAVAGVV
NIITQQDQQG AKFNVRGGTT EKGGEEMSVD GDFGTLYADG KGYLFMAASY TKEFGLDYWD
RNRAQQQESW SYDDKRMCNT MLTDTYDTAL KTNAQCMRDI TQADWRDLND SIPGGVFNEA
SSLRPNAGFW YDGQTLRDDW HEEKYGIHFA QYDWLKVPED TVAAAVKTEY DFDSGVQAYF
QLQYSRNHSE NPKSPESSDE NEFALVRNPA TGEFVEEYVG RIPKNNPFVP QEIFDGASSR
GITWDRNFAE VGAIVNENTR TTYRSWAGLR GFVWDNWEWD LSVGYGKFKQ EQNRQNEIDV
LKLRDALQAE KLADGTIQCI DADARAEGCV PVNLFGEGSI SADAADYIRA NPTITTDISM
TNVLGYVTGD LFELPAGPVA SAFGFEYRRD TQSVDTNVPN GGVTFNYVPT FEGDVDVYEA
FGEVSLPLLR DMTGVRNLSM DLSLRVADYS WSTTDLMKSY KAGIVYEPAE GYMIRANWAT
AQRAPTITEL LSPPRGDYDG FDDICDGVTA TSTGPGHDNC RLEPGIAAAI AADGVFNDEN
NGYSPNVGNP ELQEESAETF TVGVSMAPSF IDGLRVAIDY YDISIEDAMT SLGNEDIIGF
CYASSLPYGG DNPFCNDVKR DGEGQIIEVQ QRVINADETN TSGYDLALDY RYDLDGLGSL
KLKLDWSHVL DYSITATGPD GQFTDSYVGL LSSGIFEDKA SASLSWHLED LRIRWSVKYK
SSVRRSQSAH EDWEKDIAAN AENCASGSAS CVENPEPLWG NELPSVTTHN LSASYSFDVG
QDTQVRLSGG INNLFDEKGP FVIGGSGNYN SLYGGGVGRY YYLGAELKF
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