| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0673 |
|---|
| Symbol | |
|---|
| ID | 4602926 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 829291 |
|---|
| End bp | 830355 |
|---|
| Gene Length | 1065 bp |
|---|
| Protein Length | 354 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639780008 |
|---|
| Product | multidrug resistance protein |
|---|
| Protein accession | YP_926551 |
|---|
| Protein GI | 119773811 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAGC TCAGGCCGTT TTCAGGGATA GGTATTGCCG CAGTGCTGGG GGGCTTTTTG
CTCTCCTCAG CCACGCAGGG CATTGCTGGT GAGGCCCCCA GGCCGGTTAA GGTCAGCCAG
ATAGCCCTGG CCGATAATAT GAATCAAAGA TTGCTACCGG CAGAAGTCAG GGCATCTGAG
CGCGCAGGGC TTTCATTTCG GGTCAGCGGC GAAATCATGG ACATTTTGGT GCGCCCCGGC
GAAGAGGTCA AAGCCGGACA GTTACTGGCT AAGCTTGACC CGGCACTCTA CGAGCAGCAG
CTGGCAGTGG CCAAAGCCCA GTATGCACTC GCCAAGGTAC TCTATGAGCG TAACCTCAGC
TTGGTGGAAC AAGGGGTGGT GTCGCGCAAC GATTTTGACA AATCCAAGAG TAATCATGAT
GTCGCCAAGG CTGCACTGGA TAAAGCCGAA GTAGAACTTG CCTACACCCG TCTGTTGGCC
CCCTATGATG GGGTGATTTC CAAGCGCGAC AAACGCCAGT TTGAATATGT GCGGGCTCAG
GAGCCTGTCC TGAGTGTGCG CAGTGAAAAC CTGATTGATG TGAATTTTCA GCTGCCTGAA
CAGTATATAA GCCCGATCCA AAGTTATCAG GCCAATACCG GTAAGATACT GGTGCCGGAA
GTACGTTTTG ACAGCCGGGA CTCCTGGTTT GCCGCGTCTC TGAAGGAGAT GAGCACAGTG
GCCGACAGCA GTACCGGCAG TTACACAGTG ATCCTGACGC TGCCAATGCC TGAGCAGCTC
AACATTTTGC CGGGCATGTC TGCAACGGTA CGGGTATCCC TGCCTACCGA AACCCCAATC
CCCCCGCCTG AGATCCCAGC TGGTGCTGTG GTGCAGGAAG GAGATAAGAC CTGGGTATTT
CGCTGGTTGC CTGAGTCGCA GTTATTGCAA AAGGTGGAAG TGGTTCTCGA GGGCCACGTC
CTGGTCTCCG GGCTGAATGA CGGCGACTTT GTCGTGGTGG CAGGCGCAGA TGAACTCAAG
GATGGCCAGA GCGCAGTGCG CTGGGTGAAG GAGCGGGGGC TGTGA
|
|---|
| Protein sequence | MSKLRPFSGI GIAAVLGGFL LSSATQGIAG EAPRPVKVSQ IALADNMNQR LLPAEVRASE
RAGLSFRVSG EIMDILVRPG EEVKAGQLLA KLDPALYEQQ LAVAKAQYAL AKVLYERNLS
LVEQGVVSRN DFDKSKSNHD VAKAALDKAE VELAYTRLLA PYDGVISKRD KRQFEYVRAQ
EPVLSVRSEN LIDVNFQLPE QYISPIQSYQ ANTGKILVPE VRFDSRDSWF AASLKEMSTV
ADSSTGSYTV ILTLPMPEQL NILPGMSATV RVSLPTETPI PPPEIPAGAV VQEGDKTWVF
RWLPESQLLQ KVEVVLEGHV LVSGLNDGDF VVVAGADELK DGQSAVRWVK ERGL
|
|---|
| |