Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0672 |
Symbol | |
ID | 4602925 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 828182 |
End bp | 829117 |
Gene Length | 936 bp |
Protein Length | 311 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 639780007 |
Product | malate dehydrogenase |
Protein accession | YP_926550 |
Protein GI | 119773810 |
COG category | [C] Energy production and conversion |
COG ID | [COG0039] Malate/lactate dehydrogenases |
TIGRFAM ID | [TIGR01772] malate dehydrogenase, NAD-dependent |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGTTG CTGTTCTTGG TGCCGCCGGT GGTATCGGCC AAGCCCTCGC CCTACTCCTG AAAACCCAAC TGCCTGCTGG TTCCAAGCTG TCTCTGTATG ACATTGCCCC TGTCACGCCA GGTGTTGCCG TGGATCTGAG CCACATCCCA ACTGCCGTTG AGGTGAAAGG TTTTTGCGGT GAAGACCCAA CGCCTGCGCT GGAAGGTGCC GATGTGGTGC TGATTTCTGC CGGTGTGGCC CGTAAGCCAG GTATGGATCG TTCTGATCTG TTCAACATCA ACGCAGGTAT CGTCCGTAAC CTGATTGAAA AAGTGGCAGC GACCTGTCCA AAAGCGTTGG TTGGTATCAT CACCAACCCC GTAAACACCA CCGTGGCCAT TGCCGCTGAA GTGCTGAAGA AAGCTGGTGT TTATGACAAA AACCGTCTGT TCGGTGTAAC CACTCTGGAC GTTATCCGCG CCGAGACCTT CGTTGCCGAA GCTAAGGGCG TTGATGTAGC CAGCGTGAAA GTAAACGTGA TTGGCGGCCA CAGCGGCGTG ACCATTCTGC CTCTGCTGTC TCAAATTGAA GGCGTAAACT TCAGCGATGA AGAAGTGGCT GCTCTGACCA AGCGCATCCA GAACGCCGGT ACTGAAGTCG TTGAAGCCAA GGCCGGTGGC GGCAGTGCGA CCCTGTCTAT GGGTCAGGCG GCTTTCCGTT TCGGTATGTC TCTTATCCGT GGTCTGCAGG GCGAAGCCAA TGTGGTTGAG TGCGCCTATG TTGACGGCGG CAGCGAGCAC GCTGTGTTCT TCGCTCAGCC AGTGCTGCTG GGCAAAAACG GCGTAGAAAA AGTACTGCCT TATGGCGAGG TGAGCGCGTT CGAAGCCAAC GCCCGCGACG CCATGCTGGA CACCCTCAAG GGTGACATCC AGCTGGGTGT AGACTTCGTT AAGTAA
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Protein sequence | MKVAVLGAAG GIGQALALLL KTQLPAGSKL SLYDIAPVTP GVAVDLSHIP TAVEVKGFCG EDPTPALEGA DVVLISAGVA RKPGMDRSDL FNINAGIVRN LIEKVAATCP KALVGIITNP VNTTVAIAAE VLKKAGVYDK NRLFGVTTLD VIRAETFVAE AKGVDVASVK VNVIGGHSGV TILPLLSQIE GVNFSDEEVA ALTKRIQNAG TEVVEAKAGG GSATLSMGQA AFRFGMSLIR GLQGEANVVE CAYVDGGSEH AVFFAQPVLL GKNGVEKVLP YGEVSAFEAN ARDAMLDTLK GDIQLGVDFV K
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