Gene Sama_0672 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0672 
Symbol 
ID4602925 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp828182 
End bp829117 
Gene Length936 bp 
Protein Length311 aa 
Translation table11 
GC content56% 
IMG OID639780007 
Productmalate dehydrogenase 
Protein accessionYP_926550 
Protein GI119773810 
COG category[C] Energy production and conversion 
COG ID[COG0039] Malate/lactate dehydrogenases 
TIGRFAM ID[TIGR01772] malate dehydrogenase, NAD-dependent 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGTTG CTGTTCTTGG TGCCGCCGGT GGTATCGGCC AAGCCCTCGC CCTACTCCTG 
AAAACCCAAC TGCCTGCTGG TTCCAAGCTG TCTCTGTATG ACATTGCCCC TGTCACGCCA
GGTGTTGCCG TGGATCTGAG CCACATCCCA ACTGCCGTTG AGGTGAAAGG TTTTTGCGGT
GAAGACCCAA CGCCTGCGCT GGAAGGTGCC GATGTGGTGC TGATTTCTGC CGGTGTGGCC
CGTAAGCCAG GTATGGATCG TTCTGATCTG TTCAACATCA ACGCAGGTAT CGTCCGTAAC
CTGATTGAAA AAGTGGCAGC GACCTGTCCA AAAGCGTTGG TTGGTATCAT CACCAACCCC
GTAAACACCA CCGTGGCCAT TGCCGCTGAA GTGCTGAAGA AAGCTGGTGT TTATGACAAA
AACCGTCTGT TCGGTGTAAC CACTCTGGAC GTTATCCGCG CCGAGACCTT CGTTGCCGAA
GCTAAGGGCG TTGATGTAGC CAGCGTGAAA GTAAACGTGA TTGGCGGCCA CAGCGGCGTG
ACCATTCTGC CTCTGCTGTC TCAAATTGAA GGCGTAAACT TCAGCGATGA AGAAGTGGCT
GCTCTGACCA AGCGCATCCA GAACGCCGGT ACTGAAGTCG TTGAAGCCAA GGCCGGTGGC
GGCAGTGCGA CCCTGTCTAT GGGTCAGGCG GCTTTCCGTT TCGGTATGTC TCTTATCCGT
GGTCTGCAGG GCGAAGCCAA TGTGGTTGAG TGCGCCTATG TTGACGGCGG CAGCGAGCAC
GCTGTGTTCT TCGCTCAGCC AGTGCTGCTG GGCAAAAACG GCGTAGAAAA AGTACTGCCT
TATGGCGAGG TGAGCGCGTT CGAAGCCAAC GCCCGCGACG CCATGCTGGA CACCCTCAAG
GGTGACATCC AGCTGGGTGT AGACTTCGTT AAGTAA
 
Protein sequence
MKVAVLGAAG GIGQALALLL KTQLPAGSKL SLYDIAPVTP GVAVDLSHIP TAVEVKGFCG 
EDPTPALEGA DVVLISAGVA RKPGMDRSDL FNINAGIVRN LIEKVAATCP KALVGIITNP
VNTTVAIAAE VLKKAGVYDK NRLFGVTTLD VIRAETFVAE AKGVDVASVK VNVIGGHSGV
TILPLLSQIE GVNFSDEEVA ALTKRIQNAG TEVVEAKAGG GSATLSMGQA AFRFGMSLIR
GLQGEANVVE CAYVDGGSEH AVFFAQPVLL GKNGVEKVLP YGEVSAFEAN ARDAMLDTLK
GDIQLGVDFV K