| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0653 |
|---|
| Symbol | |
|---|
| ID | 4602906 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 808329 |
|---|
| End bp | 809489 |
|---|
| Gene Length | 1161 bp |
|---|
| Protein Length | 386 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639779988 |
|---|
| Product | TPR domain-containing protein |
|---|
| Protein accession | YP_926531 |
|---|
| Protein GI | 119773791 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGCAA GAATACTCTG TTGCCTGTTA CTTCCTTTGC TGGTGTCCTG TGCCTCCACT
CCCGAGCATG AGCATCAAAC CAGTGTCAGT ACCTTATTTC ACGATGAAAT TTTTGCGCCA
GTCAGTGGCT TGCCTTCCCC CGAAGAGGTC TTTTCTTTGC CGCCTGGCGT GGCGCAGGAA
TTAAGGCGCG CCTTCGAACG CCAGCGCAAC ATGCCCGGGG GCGACAATCA GCTGGCCCAC
ACTTGGCTCT CTTCTCAGCT TGCTGCGGCC GACGGTGGGT TCAGTTATCA GGACAACGAT
ACCCGTATCG CGACCGATAC CTATTATGAC AGGGCCGGGA ATTGCATGTC GTTAGTGGTA
TTGGCGACGG CCATGGCCGA TGCACTCGGG GTCGCCGTAG ACTTTCAGGA TGTGTTGGTT
CAGCCGGTTT GGGACCGACA AGGGGACTTC TATCTGGTCA ACGGTCATGT GAATCTGCGC
CTGTTACCGC CCTCGGAAGC GAATGTGGTG CATTTGCGAG GTCCGATCCT TGTGGATTTT
CTCCCCGAGC GCGCAGTGCG CGGCTATGAC AGGGTACGTA TCAATCGCAG CATGCTGCTG
GCGATGTTTT ACAATAACCT GGCCGCCGAG GCGCTTATCA ATAGAGAGCA TGACAAAGCC
TATGGCTTAA TTCGTATGTC GCTTGCGCAG AGTAATACCT TTGTGCCGGC CCTCAATACC
CTTGCCATTT TGTATCGCTA TCATCAACGG GAAGATCTTG CTGAGGAGGT GTATCGGCAG
GCGCTGAAGC AAGAGCCTGA AAATATGACC ACCCTCTACA ACCTGGCGCT GATTCTCTCT
GCCCAGGACC GGCTCGACGA GTGGGCCGAT GTGCACAAGG TGCTGGAACT GGCCAGGATC
CGCAATCCCT ATTACTACTA CGATATGGCC GAGCAGGCAT TGTCTGAGCA TGAATATCAA
CAGGCGGTAA ACTGGTTTTT ACAGGCCGTG GAAAAGGCTG ACTACCGCCA TGAGTTTTAC
TTTGGACTGT CCCAGGCCTA TTGGGCGTCC GGTAATCCCA AGAAAGCCAG GCAAAGTATG
GAAAAAGCCC TGGCACTCAG TGGCGATGAT GGAGATAAAC GGCGTTATCA GGCCAAGTTG
AACGCCATGG CAAGCCATTA A
|
|---|
| Protein sequence | MSARILCCLL LPLLVSCAST PEHEHQTSVS TLFHDEIFAP VSGLPSPEEV FSLPPGVAQE
LRRAFERQRN MPGGDNQLAH TWLSSQLAAA DGGFSYQDND TRIATDTYYD RAGNCMSLVV
LATAMADALG VAVDFQDVLV QPVWDRQGDF YLVNGHVNLR LLPPSEANVV HLRGPILVDF
LPERAVRGYD RVRINRSMLL AMFYNNLAAE ALINREHDKA YGLIRMSLAQ SNTFVPALNT
LAILYRYHQR EDLAEEVYRQ ALKQEPENMT TLYNLALILS AQDRLDEWAD VHKVLELARI
RNPYYYYDMA EQALSEHEYQ QAVNWFLQAV EKADYRHEFY FGLSQAYWAS GNPKKARQSM
EKALALSGDD GDKRRYQAKL NAMASH
|
|---|
| |