| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0630 |
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| Symbol | rumB |
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| ID | 4602883 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 782438 |
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| End bp | 783592 |
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| Gene Length | 1155 bp |
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| Protein Length | 384 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639779965 |
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| Product | 23S rRNA methyluridine methyltransferase |
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| Protein accession | YP_926508 |
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| Protein GI | 119773768 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR02085] 23S rRNA (uracil-5-)-methyltransferase RumB |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCTGTG ACTATTTCAA CCGGGGACTC TGTCAGTCGT GTCGTCTGAT GTCCAAGCCA
GTGACTGAGC AGTTGCTGGA GAAAGAAGCC AGGCTCACCC ACCTGCTGGG CGGTCTGCCG
GTAGACGAAC GTTTGGCTCC GGTATCCGGG CCCGAGTTTG GTTTTCGCAA CAAAGCAAAA
ATGGTGGTGA TGGGCGCGGC CCACGCCCCT GTGCTGGGTA TTCCGGGTCC CGATGGTCAA
CCCGTGGACC TCAGCCATTG CCCCCTCTAT CCACAAGACA TGCAGGCGCT CTTGCTTGAG
CTGACTTCCT TTGTGCGCCG TGCAGGTATT CCGCCTTACC GGGTCGATAA AGCCAAGGGC
GAGCTTAAGT TTATTTTGCT GACCCGCAGC GCCGTGCGCG GTGAGTTTAT GCTGCGATTT
GTGCTTCGAA GCAAAGATGC CATTCCCCGT ATCGAACGTG AACTGCCGAA ACTCTTGGCC
GATTTCCCGG CCATTAAGGT GGTCTCGGTG AACCTGCAAC CGGTGCACAT GGCAAGACTG
GAAGGTGAAG AGGAAATCTT TCTTACCCAA GCCACCCGCC TCGATGAGGT ATTCAACGGG
GTGCCACTCT TTATCCGCCC CAAAAGCTTT TTCCAAACCA ACCCTGAGGT GGCCTCGCGT
CTATACGCCA CAGCCGCCAA GTGGGTTGAT GAATTAAGTC CAAAGAGCCT GTGGGATCTT
TTTTGCGGTG TAGGCGGCTT TGGGTTGCAC TGCGCCAATG AATCATTGCC GGTGACAGGC
ATTGAGATTG AAGCCGAAGC CATCGACTGC GCCAAAACCT CGGCAGCGGC CATGGGACTG
GATAATCTGT CGTTTGCTGC GCTGGATTCC ACCGACTTTG CCATGGGCCA GCAGGCACAG
GAAGTACCCG AGGTCATCAT AGTGAATCCA CCGCGCCGGG GCATTGGTGA GGAACTGTGT
GAGCGTTTGT CGGCCTTTGG GCCGAGAGCC ATCATTTATT CCAGCTGTAA TCCCGAGACG
CTGGCTAAAG ATCTGGCCCT GATCTCGGGC TATCGCATCG CCCGGGTACA GCTGTTCGAC
ATGTTCCCCC ACAGTGACCA CTTTGAGGTG CTGTGTCTGC TGCTCAAGGA AGCGGCCTGC
GCCAGCGCAG ACTGA
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| Protein sequence | MSCDYFNRGL CQSCRLMSKP VTEQLLEKEA RLTHLLGGLP VDERLAPVSG PEFGFRNKAK
MVVMGAAHAP VLGIPGPDGQ PVDLSHCPLY PQDMQALLLE LTSFVRRAGI PPYRVDKAKG
ELKFILLTRS AVRGEFMLRF VLRSKDAIPR IERELPKLLA DFPAIKVVSV NLQPVHMARL
EGEEEIFLTQ ATRLDEVFNG VPLFIRPKSF FQTNPEVASR LYATAAKWVD ELSPKSLWDL
FCGVGGFGLH CANESLPVTG IEIEAEAIDC AKTSAAAMGL DNLSFAALDS TDFAMGQQAQ
EVPEVIIVNP PRRGIGEELC ERLSAFGPRA IIYSSCNPET LAKDLALISG YRIARVQLFD
MFPHSDHFEV LCLLLKEAAC ASAD
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