| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0619 |
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| Symbol | |
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| ID | 4602872 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 772953 |
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| End bp | 774089 |
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| Gene Length | 1137 bp |
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| Protein Length | 378 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639779954 |
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| Product | response regulator receiver protein |
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| Protein accession | YP_926497 |
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| Protein GI | 119773757 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.171629 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGATAAAG AATCACTGTC GTTTGATGAA GCGCTTAAGG ACGAATCGCG CCAATACATG
CTGGCAAGCT TTCAATGGTT GAGTTTTACC AGCCTGGTGC TGCTGACTGC CGTTGGTCTC
AATATCGCCT TGGAACCCGG CCTGAATTTG GGGTTGGATA CGGCGTTTAC CATGATGCTG
CTGCCGGGCT CTCTCTGCCT GCTGTATTTG GGGCTCAGAT TCGCCAGGGT TCCCTGGTCT
AGAAACCTAC TATGGAACCT CTTCTTTTTA GCGGCGCTGG TCATCAGTTG GTTGATATCC
ATGTCGTTGC TGCGAAGCGC GGGTCTGCTG GTGTTGCCGG GCATTGAAAC CCTCAGTGAT
GTGCTCAGCC TGGCCATGGC CGTGGCGCTC TTTCCCAGTA TAAAGTTGAC TGCCGCGACG
GTAGCGCCTT TTTTACTTTA TTCAGCTTTT TATCGCTACG AAGTCTACCC GGAAAGTATT
TACTTTACTG TCCTGCGTAC TCTGTTCATG TTTTTGATCA TCATGAGTGC CCAGCGGGTG
ATTTTTAAAT GGTTTAAAAA GGCCGTGCGG CGCAATGTGG AAAAACGGCG GTTGCTCAAG
CATTTTCGCC GCATGGCCTT GCTGGACGGT CTCACTGGCC TCAGTAACAG GCGCCATTTT
GATGAAATTC TGGATCAGGA AATTCGGGCC TCGACCCGGA CCGGGCATCC GTTAAGCCTT
ATTCTGTTGG ATATCGATTT CTTCAAACGG CTCAATGATG CGCTCGGACA CCAGGCCGGT
GACGACTGCT TGCGGCAACT GGGGCAACTC TTGTCGGATG TGGCTGCCAG ACCCAGGGAT
CTTGCTGTGC GCTATGGCGG TGAAGAGTTT GCGGTGCTGC TGCCAGAAAC CACACTAACA
GGCGCAGTGG AAGTGGCCAA TCGTATTGCG AAACTCCTGG CCAAAGCGGC CATACCTCAC
CCGGATTCTC AGGTTGCTTC GCATATTACT GTTTCTCAGG GTTTGGTTCA GTGGCAGCGG
GGAATGGATG CTGAAGCCTT GTTGGAGGCA AGTGATGCCG CGCTTTACCG GGCCAAAGAA
AGTGGCCGTA ACTGTTATGT ACAAACGGTT ACGCCAGCGG GGGATAAGGC CGGTTAG
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| Protein sequence | MDKESLSFDE ALKDESRQYM LASFQWLSFT SLVLLTAVGL NIALEPGLNL GLDTAFTMML
LPGSLCLLYL GLRFARVPWS RNLLWNLFFL AALVISWLIS MSLLRSAGLL VLPGIETLSD
VLSLAMAVAL FPSIKLTAAT VAPFLLYSAF YRYEVYPESI YFTVLRTLFM FLIIMSAQRV
IFKWFKKAVR RNVEKRRLLK HFRRMALLDG LTGLSNRRHF DEILDQEIRA STRTGHPLSL
ILLDIDFFKR LNDALGHQAG DDCLRQLGQL LSDVAARPRD LAVRYGGEEF AVLLPETTLT
GAVEVANRIA KLLAKAAIPH PDSQVASHIT VSQGLVQWQR GMDAEALLEA SDAALYRAKE
SGRNCYVQTV TPAGDKAG
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