| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0604 |
|---|
| Symbol | |
|---|
| ID | 4602857 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 756340 |
|---|
| End bp | 757443 |
|---|
| Gene Length | 1104 bp |
|---|
| Protein Length | 367 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639779939 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_926482 |
|---|
| Protein GI | 119773742 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3608] Predicted deacylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.145028 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGGTCG ATAAACACGA AGTTCGGGTC GGCGAGCTGG CTGCAGGACA GCCGCTGTCT
TTGCCTGTGT ATCGCTTTAA AGGCAAGGGA GCTGGCCCCA GTGTCTATAT TCAGGCCAAC
GTCCATGGCG CTGAGGTGCA GGGCAATGCG GTTATCTACC AGCTGATGAA ACTCCTCGAG
CACTACGAGC TTCTGGGGGA TATCAGTCTG GTGCCACTGG CAAACCCCTT GGGTATTAAC
CAAAAGAGCG GTGAGTTTAC CCTTGGGCGT TTCGACCCCA TTACCGGGGT CAATTGGAAT
CGCGAGTATC TGGACCATGG GTTCAATATT GAAGTCTGGT ATCAGGAGCA TTCCCATCTG
GATGACGATA CGCTCATCAC CGCATTTCGC GCCACCCTTG TGGAAGAATG TGCCCGCAGA
CTGAATAACC CCTGGGGTGT GACCACAGGG CACAGGCTGG CAGTAACCTT GCAGTCCATG
GCACACAGGG CCGACATAGT GCTCGATCTG CATACCGGCC CCAAGTCATG CAAGCATCTG
TATTGCCCCG AATACGAGCG CAGCGCTGCC CAGTATTTCT CAATACCTTA TACCTTGCTC
ATTCCCAACA GCTTTGGCGG CGCCATGGAC GAAGCGGCCT TTGTGCCCTG GTGGACATTG
GCCGAGGTGG CATCCAGCCA TGGTCGCGAA CTTGGGGTGA GAGTCTCGGC ACTAACGCTG
GAGCTTGGCA GTCAGGAGCG CATTGATTTG GATGATGCGC TGGAAGATGC AGAAGGTATC
CTGGCCTATT TGAGTCATCG TGGTGTGATT GCCGAAACCG TGTTGCCCAA ACCCATGAAA
CGATACGGCT GTTTCCTGAA AAACTATCGC AAGTTTCATG CCCCAAAAGC GGGGATGGTG
GAATACCTTG GGAAGGTGGG TGTGCCGATG AAGGCAACCG ATCCCCTGGT GAATCTGTTA
AGACTGGATC TCTACGGCAC AGGTGAAGAG CTGACCGTAT TGCGTCTGCC TGAAGATGGC
GTGCCCATAC TGCATTTTGC CTCGGCTTCA GTACATCAGG GCACCGAGCT TTATAAGGTT
ATGACCAAGG TCTTCGAGCT CTGA
|
|---|
| Protein sequence | MRVDKHEVRV GELAAGQPLS LPVYRFKGKG AGPSVYIQAN VHGAEVQGNA VIYQLMKLLE
HYELLGDISL VPLANPLGIN QKSGEFTLGR FDPITGVNWN REYLDHGFNI EVWYQEHSHL
DDDTLITAFR ATLVEECARR LNNPWGVTTG HRLAVTLQSM AHRADIVLDL HTGPKSCKHL
YCPEYERSAA QYFSIPYTLL IPNSFGGAMD EAAFVPWWTL AEVASSHGRE LGVRVSALTL
ELGSQERIDL DDALEDAEGI LAYLSHRGVI AETVLPKPMK RYGCFLKNYR KFHAPKAGMV
EYLGKVGVPM KATDPLVNLL RLDLYGTGEE LTVLRLPEDG VPILHFASAS VHQGTELYKV
MTKVFEL
|
|---|
| |