Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0601 |
Symbol | |
ID | 4602854 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 752820 |
End bp | 753536 |
Gene Length | 717 bp |
Protein Length | 238 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 639779936 |
Product | two-component response regulator |
Protein accession | YP_926479 |
Protein GI | 119773739 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.000457476 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0622951 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAAATC CGCACATTCT GATCGTAGAA GACGAAGCCG TTACCCGTAA TACATTAAGA AGTATTTTTG AGGCCGAGGG ATATGTGGTG ACTGAGGCCA ACGATGGCGC AGAAATGCAT AAAGCCTTGC AGGAAAATAA AATAAACCTG GTGGTGATGG ATATCAACCT GCCGGGTAAA AACGGTCTGT TGTTGGCACG CGAACTGCGT GAAATCAACA ACATTGGCCT GATTTTCCTG ACTGGCCGTG ACAACGAAGT GGACAAGATC CTGGGTCTTG AAATTGGCGC GGACGATTAT ATTACCAAGC CGTTCAACCC ACGTGAGCTG ACCATTCGTG CCCGTAATCT TCTGACTCGC GTCAATAGCG CTGGCGCCGA AGTCGAAGAG AGAGCCGCGG TCGAGGTTTA TCGTTTCAAT GACTGGAGCC TGGAAATCAA CAGCCGTTCT CTGGTCAGCC CAACCGGTGA GTCTTACAAA CTGCCACGCA GCGAATTCCG TGCCATGCTG CACTTCGTTG AAAACCCAGG CAAGATCCTG AGCCGCGCCG ATCTTCTGAT GAAGATGACA GGCCGTGAAC TCAAGCCACA CGACCGTACC GTAGACGTGA CTATCCGTCG TATCCGCAAG CACTTCGAAA GCCAGCCAGA TACACCGGAA ATCATCGCCA CCATCCACGG TGAAGGCTAT CGCTTCTGTG GTAACCTGGA CGAATAA
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Protein sequence | MQNPHILIVE DEAVTRNTLR SIFEAEGYVV TEANDGAEMH KALQENKINL VVMDINLPGK NGLLLARELR EINNIGLIFL TGRDNEVDKI LGLEIGADDY ITKPFNPREL TIRARNLLTR VNSAGAEVEE RAAVEVYRFN DWSLEINSRS LVSPTGESYK LPRSEFRAML HFVENPGKIL SRADLLMKMT GRELKPHDRT VDVTIRRIRK HFESQPDTPE IIATIHGEGY RFCGNLDE
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