Gene Sama_0601 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0601 
Symbol 
ID4602854 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp752820 
End bp753536 
Gene Length717 bp 
Protein Length238 aa 
Translation table11 
GC content51% 
IMG OID639779936 
Producttwo-component response regulator 
Protein accessionYP_926479 
Protein GI119773739 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000457476 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0622951 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAAATC CGCACATTCT GATCGTAGAA GACGAAGCCG TTACCCGTAA TACATTAAGA 
AGTATTTTTG AGGCCGAGGG ATATGTGGTG ACTGAGGCCA ACGATGGCGC AGAAATGCAT
AAAGCCTTGC AGGAAAATAA AATAAACCTG GTGGTGATGG ATATCAACCT GCCGGGTAAA
AACGGTCTGT TGTTGGCACG CGAACTGCGT GAAATCAACA ACATTGGCCT GATTTTCCTG
ACTGGCCGTG ACAACGAAGT GGACAAGATC CTGGGTCTTG AAATTGGCGC GGACGATTAT
ATTACCAAGC CGTTCAACCC ACGTGAGCTG ACCATTCGTG CCCGTAATCT TCTGACTCGC
GTCAATAGCG CTGGCGCCGA AGTCGAAGAG AGAGCCGCGG TCGAGGTTTA TCGTTTCAAT
GACTGGAGCC TGGAAATCAA CAGCCGTTCT CTGGTCAGCC CAACCGGTGA GTCTTACAAA
CTGCCACGCA GCGAATTCCG TGCCATGCTG CACTTCGTTG AAAACCCAGG CAAGATCCTG
AGCCGCGCCG ATCTTCTGAT GAAGATGACA GGCCGTGAAC TCAAGCCACA CGACCGTACC
GTAGACGTGA CTATCCGTCG TATCCGCAAG CACTTCGAAA GCCAGCCAGA TACACCGGAA
ATCATCGCCA CCATCCACGG TGAAGGCTAT CGCTTCTGTG GTAACCTGGA CGAATAA
 
Protein sequence
MQNPHILIVE DEAVTRNTLR SIFEAEGYVV TEANDGAEMH KALQENKINL VVMDINLPGK 
NGLLLARELR EINNIGLIFL TGRDNEVDKI LGLEIGADDY ITKPFNPREL TIRARNLLTR
VNSAGAEVEE RAAVEVYRFN DWSLEINSRS LVSPTGESYK LPRSEFRAML HFVENPGKIL
SRADLLMKMT GRELKPHDRT VDVTIRRIRK HFESQPDTPE IIATIHGEGY RFCGNLDE