| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0586 |
|---|
| Symbol | |
|---|
| ID | 4602839 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 732315 |
|---|
| End bp | 733223 |
|---|
| Gene Length | 909 bp |
|---|
| Protein Length | 302 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639779921 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_926464 |
|---|
| Protein GI | 119773724 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.364179 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.000128837 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAACATTC CAATCAAGAA CTTGCACTGT TTTGTGACCC TTGCCGAGAC GGGCAGTTTT
ACCCGCGCGG CCGAAAAACT GCACCTGACT CAGCCCACGC TGAGCAAGAT GCTGCAAAGA
CTGGAAGACC ATTGGCAGCA GCAGCTCATC ATCCGCAACA ATCAAAAGCT GTCACTGACT
CAGGCGGGCG AACTCTTGCT TGAACACGCC AGAGAAATGC TTGGGCAATG GCATTTATTG
GAAGAAGACT TATCAAATCT TCGCGGGGTA CAACGGGGAT ACTTGCGTCT GGGAGTGTGC
CCCATGATGA GCAGCCTGGT GATTGAACTC CTCACTGCGT TTCGAGCAAG ATATCCCGGG
GTCAGATTGG AGATGTTCGA GTACGGCGGC TTCGGCTGTG AAAAGGCTCT GCTGGCAAAC
AATCTGGATA TTGCCTTTAC CGCCCTGCCT GCAACCCACG CCGATGAGCT GACCGCGCAG
CCGTTGACGG CTTATCCCCT GCTCGCCTGC CTGCCGGCAG GCCACAAGCT TGCGAACAAA
GCCGCCCTCG ACTGGTGCGA CTTTGGCTCC CATCCCTTTA TCATGTACAA CCAGGATTTT
GCGCTGGCAA AGCTGCTCGA CAGCCTGGCA AGAAACGCCG GAGTAGAGCT GAATGTCGCC
TATCGCAGCG GCCAGTGGGA CTTTTTGGCG AGCATGGTGG AGGCCAACAT GGGGCTGGCC
ATATTGCCCG CGCCCATTTG CGAAAAATTA ACCGACAAGG CGCTGTGCTT CAGGCCATTA
AGCGGCGGAC ACACCTGGGA CCTGGCACTC ATCTGGCGCA GTCATCTGCA CCTGACCCCT
GCGGCGGCCG CCTTTCTGGC CCTCAGTCGT GATAGGGGCC AAGCCACTGC GCGTCCGGCG
GCAGAATAA
|
|---|
| Protein sequence | MNIPIKNLHC FVTLAETGSF TRAAEKLHLT QPTLSKMLQR LEDHWQQQLI IRNNQKLSLT
QAGELLLEHA REMLGQWHLL EEDLSNLRGV QRGYLRLGVC PMMSSLVIEL LTAFRARYPG
VRLEMFEYGG FGCEKALLAN NLDIAFTALP ATHADELTAQ PLTAYPLLAC LPAGHKLANK
AALDWCDFGS HPFIMYNQDF ALAKLLDSLA RNAGVELNVA YRSGQWDFLA SMVEANMGLA
ILPAPICEKL TDKALCFRPL SGGHTWDLAL IWRSHLHLTP AAAAFLALSR DRGQATARPA
AE
|
|---|
| |