| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0579 |
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| Symbol | |
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| ID | 4602832 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 719846 |
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| End bp | 720757 |
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| Gene Length | 912 bp |
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| Protein Length | 303 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639779914 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_926457 |
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| Protein GI | 119773717 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.264482 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0538028 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAGATT TGAATGGGAT GGCGCTATTT GCCGCAGTGG TCAGATCTCA GGGTTTCAGC
CAGGCGGCCA GGGATATTGG CATGCCAAAA TCCACCATTA GTCGTAAAGT TGCTCAATTG
GAAGAAGAAC TTGGCGTACG ACTGCTGCAG CGTGACAGCC GCAATTTAAG CCTCACCCAG
GTAGGCACCC TTTTTTATCA GCACTGCGAA ACCATAGTGA ATGAGCTCGA GGCTGCCAAG
GCGGTGATCG AGCATACCCA CGCTGACGTT TCCGGCTCGC TGCGTATCGC CATCCCCGTC
TCGTTCAGCC AGGAATTAAT CGCCAATTTG TGCAGTGGCT TTTTACGCCT CTATCCCAGT
GTGGAACTCG ATGTCCAATT TACCGACTCG GATGTAGGTC TGGTGGGTGA AGGTTACGAT
ATCGCCATCA AGTACGGCCC ACTGCAACCT TCCGACAATG TGGCCAGATT GCTGTTTGAG
CGTCAGCCTA TTTTGGTGGC AAGTCCAGGT TACCTTAAAA AGCATGGCAC CCCTGCCACA
CCAAAAGAGC TGGGGCAACA CGCCGGCATT TTACTTGGCA CCACACGCTC TGCCCCCATC
TGGCCTCTGG GCAAAGGGGG ACGCAAAACC ATGGTCAGTT TCAATCGCAA GGTGCGGGTT
AACAGCGCCG TGATGGTGCG CCAATTGGCA TTGGATGATT TTGGTATTGC CATGCTGTCC
CATGCCCAGT GCAAAAAGGA TCTCGCCAGC GGTTCCCTGT TGCCCATATT GCCCGAGTGG
CCCATGGAGC CCTTTAAGGT CTATGGGGTC TATTCCAGTC GAAAACAGCT GGCCACCAAC
ATCAGTGTGT TTCTCGACTT CTTTATCAAG CGTTTCGGCA GTCAGGAATC CCTGCTTGGC
ATGATGGGCT AA
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| Protein sequence | MPDLNGMALF AAVVRSQGFS QAARDIGMPK STISRKVAQL EEELGVRLLQ RDSRNLSLTQ
VGTLFYQHCE TIVNELEAAK AVIEHTHADV SGSLRIAIPV SFSQELIANL CSGFLRLYPS
VELDVQFTDS DVGLVGEGYD IAIKYGPLQP SDNVARLLFE RQPILVASPG YLKKHGTPAT
PKELGQHAGI LLGTTRSAPI WPLGKGGRKT MVSFNRKVRV NSAVMVRQLA LDDFGIAMLS
HAQCKKDLAS GSLLPILPEW PMEPFKVYGV YSSRKQLATN ISVFLDFFIK RFGSQESLLG
MMG
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