| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0577 |
|---|
| Symbol | |
|---|
| ID | 4602830 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 717920 |
|---|
| End bp | 718474 |
|---|
| Gene Length | 555 bp |
|---|
| Protein Length | 184 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639779912 |
|---|
| Product | sprT protein, putative |
|---|
| Protein accession | YP_926455 |
|---|
| Protein GI | 119773715 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3091] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00218492 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.10682 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTTCGT TTTTTCGCCA GTCCAAACGG CCAGCCAGAT CACAACTCGT CACAGATGCC
ATGGCGCCTG CAACCGCAGT CCAGGAAGAT GCCTGCCTGC ATCTCGAGCG CGCCTGTCTC
AGGGCAGAAG CTGGCCTTGG CCGCGACATT CCAAGACCCA CGCTGAGGTT CGATATCCGG
GGCAAAACAG CGGGTATGGC ATACAGCAGC CACAACCTTA TCCGCTTGAA TCCCAAACTG
TTGGAAGAAA ACCCCGACAT CTTCTTTACC GAAGTCATTC CCCATGAGCT TTGCCATCTG
TTGGCCCATT CTCTCCACGG CAAAGTCAAA CCCCATGGGA AAGAGTGGCA AACACTGATG
CGCGGCCTGT TTGGACTCTC CCCCCGCACC ACTCATAGTC TGGACACCAG CAGCGTCAGC
AGAAGTATCG AATACCGCTG CCAATGTGGC CCGGTTCCAC TATCCGTCAG GCGCCACAAT
AAAATTGTCA GGGGCGATAC ACGCTATCTG TGCCGTCGCT GCGGTGACTA CCTGCAACAG
GCCGATACGC GCTGA
|
|---|
| Protein sequence | MFSFFRQSKR PARSQLVTDA MAPATAVQED ACLHLERACL RAEAGLGRDI PRPTLRFDIR
GKTAGMAYSS HNLIRLNPKL LEENPDIFFT EVIPHELCHL LAHSLHGKVK PHGKEWQTLM
RGLFGLSPRT THSLDTSSVS RSIEYRCQCG PVPLSVRRHN KIVRGDTRYL CRRCGDYLQQ
ADTR
|
|---|
| |