Gene Sama_0576 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0576 
Symbol 
ID4602829 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp717046 
End bp717774 
Gene Length729 bp 
Protein Length242 aa 
Translation table11 
GC content53% 
IMG OID639779911 
Productdeoxyribonuclease I 
Protein accessionYP_926454 
Protein GI119773714 
COG category[L] Replication, recombination and repair 
COG ID[COG2356] Endonuclease I 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000105466 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.211294 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGCGCTATC TATTTGCTTT GGCAGCATTT GTTGCCCCAT TGTCTTTAAG TTTTGCCCAG 
AATACGCCTC CATCCAACTT TGCCGAAGCC AAGCGCACGG CCCAGAAAAT CTATGCCGCA
CTGCCGATGC AGAGCTTTTA CTGCGGCTGC AGCATTCAAA CCAAGGGCAA ACGCTGGGAA
GTTGACCACA ACAGCTGCGG CTATCAGGTC CGCAAAAACG CCGGACGCGC AGAGCGGATA
GAGTGGGAAC ATCTGGTACC TGCGTGGGAA TTCGGCCACC AGCGCCAGTG CTGGCAACAG
GGAGGCCGAA AGGAGTGTAC TCAAAGTGAC ACCACCTTCG TGCGCATGGA GGCCGATTTA
CATAATCTGG TGCCAGCCAT AGGCGAAATT AACGGCGACA GAAGCAACTA TCGTTTCCGT
GAATGGAATG CAAATCCGAC CCAGTATGGT CAGTGCGAGA TGGTGGTGGA CTTCAAGGCT
CGCCAAGTAC AGCCACCCCG TCGAAGCCGT GGCGCCATCG CCCGCAGTTA CCTTTACATG
CAGGCTCAAT ATGGGCTCAA GATTGCGCCT GCCCAATTAA AGTTGTTTGA AGCATGGGAT
AAAAGCTATC CAGTTGATAG TATTGAGTGC CAAAGAGATC AGCTTATTGC CGGCGCCCAG
GGTAACCACA ATCCCTTTGT TGCACGCGGC TGTAAAGCGG GTGCACTTGA TGTTCAAACG
GCAGATTAA
 
Protein sequence
MRYLFALAAF VAPLSLSFAQ NTPPSNFAEA KRTAQKIYAA LPMQSFYCGC SIQTKGKRWE 
VDHNSCGYQV RKNAGRAERI EWEHLVPAWE FGHQRQCWQQ GGRKECTQSD TTFVRMEADL
HNLVPAIGEI NGDRSNYRFR EWNANPTQYG QCEMVVDFKA RQVQPPRRSR GAIARSYLYM
QAQYGLKIAP AQLKLFEAWD KSYPVDSIEC QRDQLIAGAQ GNHNPFVARG CKAGALDVQT
AD