Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0576 |
Symbol | |
ID | 4602829 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 717046 |
End bp | 717774 |
Gene Length | 729 bp |
Protein Length | 242 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 639779911 |
Product | deoxyribonuclease I |
Protein accession | YP_926454 |
Protein GI | 119773714 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2356] Endonuclease I |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000000105466 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.211294 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | TTGCGCTATC TATTTGCTTT GGCAGCATTT GTTGCCCCAT TGTCTTTAAG TTTTGCCCAG AATACGCCTC CATCCAACTT TGCCGAAGCC AAGCGCACGG CCCAGAAAAT CTATGCCGCA CTGCCGATGC AGAGCTTTTA CTGCGGCTGC AGCATTCAAA CCAAGGGCAA ACGCTGGGAA GTTGACCACA ACAGCTGCGG CTATCAGGTC CGCAAAAACG CCGGACGCGC AGAGCGGATA GAGTGGGAAC ATCTGGTACC TGCGTGGGAA TTCGGCCACC AGCGCCAGTG CTGGCAACAG GGAGGCCGAA AGGAGTGTAC TCAAAGTGAC ACCACCTTCG TGCGCATGGA GGCCGATTTA CATAATCTGG TGCCAGCCAT AGGCGAAATT AACGGCGACA GAAGCAACTA TCGTTTCCGT GAATGGAATG CAAATCCGAC CCAGTATGGT CAGTGCGAGA TGGTGGTGGA CTTCAAGGCT CGCCAAGTAC AGCCACCCCG TCGAAGCCGT GGCGCCATCG CCCGCAGTTA CCTTTACATG CAGGCTCAAT ATGGGCTCAA GATTGCGCCT GCCCAATTAA AGTTGTTTGA AGCATGGGAT AAAAGCTATC CAGTTGATAG TATTGAGTGC CAAAGAGATC AGCTTATTGC CGGCGCCCAG GGTAACCACA ATCCCTTTGT TGCACGCGGC TGTAAAGCGG GTGCACTTGA TGTTCAAACG GCAGATTAA
|
Protein sequence | MRYLFALAAF VAPLSLSFAQ NTPPSNFAEA KRTAQKIYAA LPMQSFYCGC SIQTKGKRWE VDHNSCGYQV RKNAGRAERI EWEHLVPAWE FGHQRQCWQQ GGRKECTQSD TTFVRMEADL HNLVPAIGEI NGDRSNYRFR EWNANPTQYG QCEMVVDFKA RQVQPPRRSR GAIARSYLYM QAQYGLKIAP AQLKLFEAWD KSYPVDSIEC QRDQLIAGAQ GNHNPFVARG CKAGALDVQT AD
|
| |