| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0572 |
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| Symbol | |
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| ID | 4602825 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 711328 |
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| End bp | 713802 |
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| Gene Length | 2475 bp |
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| Protein Length | 824 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639779907 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_926450 |
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| Protein GI | 119773710 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.272236 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATGAGA TAGCACAAAG CCGTTGGTAT CTGAGCCTGA GATGGAAGTT ACTGGGGGCC
GTGTTTACGC TGATGAGCAT TCTTACCCTG GTCTTGGGCA CCTTTGCCTA TCAAGAGCTG
GGACAGCAGC AGGCTTTTTT ACTCGAGTCT CAACATCACG CATTGCAGCA ACACTTGCGC
CGTGCAGTAA ATCAAGCGGT GGAAGATGCC GTAAGCAGCG CCCATCAGGT ACTCCTTTAC
ATGGGTCCCC GTGGGTATGC CCCGCAACTT AGCCACAAAG ATCTCTCTGA GCAATGGCCA
GACATGCAGC TGGCCTGGGG CATGGATACG TTTGGACGCA TTGCGTCCAG TAACCACAGT
GGTTTTTACC TGGGCCGCTT GCCGGGCGAT CGGGAGTACA AATGGTTTCA GCGCTGGAGT
AAGGCCAGCG TGCCCATCTG GCGGATTGAT TGTGTGGAGC GGTGTTTACT GCAAATTCAG
GTGCCGGTAC TGCACAACAA AGAGCATTTT CGATATTACC TGGAATTTGA GCTGACGAAC
CTGCTCAGCA GCTTTCGGGC GCAGGATGAA TTTGAGTTGG CGGTGCTGGG TCCTCGGGAA
AACCTGGCTC AGGAATCTCT TTTCTGGGGG CGACGTCTTT TCAGTATCAG TAATCGTCAA
TTGAGTCTGC CCCGATTGGA GCAGGCCAAA AGCGAGTGGA ACTGGCAGGA GATTTCCAAC
AAACAGCGCC TCTATCATCT TTCGGGTCAC CCTTATGCCA TGTGGTTTTT CTCTCTGGAT
GCCACCGAAG ACGGTCCCGG AATCATAGTG ATGTGGCAGT TGGATGAGTG GCATTTCCTG
CTCAAGGCGT TTCAGCAAAA CATGTTGGGA TTGCTGCTGA TAGCCTTGCT GCTCACTGGC
GCGACACTGG GGCTGCTGGC CTGGTCCCCT ATACGGCGCC TCGAGTTATA CACCCGCATG
CTGCCGCTTA TTGCCGAGCA AAAGTTTGAT GAAATCCGGA CAAGATTGGG CACGGGGCGT
GTATTGGTAT CCGATGAGGT GGATGTAATG GGGCGTGCCA TGATGGCGCT CACGGAACGT
CAGCAAATTC TGGAGTCGGA TGTCGACTCT TATACCCGAG AACTTGAGCG ACTGGCCATG
CTCGACATGC TCACGGGCCT GCCCAATAAA TCCATGTTGT TGCATGAGCT TAATAAGGCG
ATTGCCTGTG TGGGGCGGGT GCACGACAAG TTGGCACTGC TGTTTTTGGA TCTTGATGCC
TTTAAACGTA TCAATGATGC ACTGGGGCAC AACGAAGGCG ATGAGTTGCT GAAAATCATC
GCCTCGCGAT TGGCCAATAG TGTTCGCAGT ATGGATACGG TATTCCGTCA GGGCGGTGAT
GAGTTTTTGA TCCTGCTGCG TGGCATACGC GACGAACAGG ACGTGCGGCG GGTGATACAC
AAGATTTTCG CATCGTTGCA GCAGCCAGTG GTACTGGGGA ATCACAAGCT GATTGTCACC
ACCAGCATAG GGGTGGCCAT GTGTGACTCA CCCAGCACCA GTGCCGAAGA GCTGATTAAG
TATGCTGACC TCGCCATGTA TCAGGCCAAG GATGCCGGTC GCTCCAACTT CAGAGTGTTT
ACCGAAGACA TGTTGCACAA AGCCAATAAT CGCCTGATGG TTGAGCAGGA TATCAGCAGT
GCTATCAGCG AGCGGCAGCT GATGCTGTTT TTACAGCCGA TAGTCTCCCT GGATGGCGGC
GTCATCAAGG GCTTTGAGGC GCTGGTCCGT TGGTTTCACC CCAGTCGTGG ATTAATCATG
CCCGGCAGTT TTATCCCCCA TATTGAAGAA AGCGACGCCA TTATCAGGGT GGGCAACTAT
GTGCTGGGGG AAGCGGTGGA CATGCTTAAA CGGCTCAGGC TTCAGGGGTG GGACGACCTT
TACATTGCGG TGAACCTGTC GGCACGTCAC TATCTGACTC CGGGGTTAAG TGATTTTATT
CGTAAATTAC TGACAGCCTC AGGTATTCCG CCAAAGTGCT TGCTGCTGGA AGTAACAGAA
GAGAGTGTTA TTGAGCAGGT AGACAAGGCC ATGGAGGTGA TGCGTGAGCT GAAAATGCTG
GGTGTGCGCA TTGCTATTGA TGACTTTGGA ACCGGCTATT CATCCTTGAG TTACCTAAAG
CAACTGCCCT TTGATGTACT CAAAATCGAC AGGTGTTTTA CCGCAGGCGT ATTGGAAAAT
GGAGCCGATA CCCACATAGT CACCACAGTA ATAGATTTGG CGCATCATCT GGGTAGAACC
GTGGTGGCAG AGGGCATTGA AACCGAGTTA CAGCGGGAGT TTTTGGAAGC CGCTGGCTGC
GAACTCGCCC AAGGCTATTT ATTCTCCAAG CCCATTTGTG AAGAGAGGGC GATGGAAATC
CTGAAGGGCA TTACTGAAGG GCGGGAGTGG CCCAGGAGCG GCGATGGCGA ACTCCTGGGC
AAAATGGCGG GTTAG
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| Protein sequence | MNEIAQSRWY LSLRWKLLGA VFTLMSILTL VLGTFAYQEL GQQQAFLLES QHHALQQHLR
RAVNQAVEDA VSSAHQVLLY MGPRGYAPQL SHKDLSEQWP DMQLAWGMDT FGRIASSNHS
GFYLGRLPGD REYKWFQRWS KASVPIWRID CVERCLLQIQ VPVLHNKEHF RYYLEFELTN
LLSSFRAQDE FELAVLGPRE NLAQESLFWG RRLFSISNRQ LSLPRLEQAK SEWNWQEISN
KQRLYHLSGH PYAMWFFSLD ATEDGPGIIV MWQLDEWHFL LKAFQQNMLG LLLIALLLTG
ATLGLLAWSP IRRLELYTRM LPLIAEQKFD EIRTRLGTGR VLVSDEVDVM GRAMMALTER
QQILESDVDS YTRELERLAM LDMLTGLPNK SMLLHELNKA IACVGRVHDK LALLFLDLDA
FKRINDALGH NEGDELLKII ASRLANSVRS MDTVFRQGGD EFLILLRGIR DEQDVRRVIH
KIFASLQQPV VLGNHKLIVT TSIGVAMCDS PSTSAEELIK YADLAMYQAK DAGRSNFRVF
TEDMLHKANN RLMVEQDISS AISERQLMLF LQPIVSLDGG VIKGFEALVR WFHPSRGLIM
PGSFIPHIEE SDAIIRVGNY VLGEAVDMLK RLRLQGWDDL YIAVNLSARH YLTPGLSDFI
RKLLTASGIP PKCLLLEVTE ESVIEQVDKA MEVMRELKML GVRIAIDDFG TGYSSLSYLK
QLPFDVLKID RCFTAGVLEN GADTHIVTTV IDLAHHLGRT VVAEGIETEL QREFLEAAGC
ELAQGYLFSK PICEERAMEI LKGITEGREW PRSGDGELLG KMAG
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