| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0565 |
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| Symbol | |
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| ID | 4602818 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 704038 |
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| End bp | 705057 |
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| Gene Length | 1020 bp |
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| Protein Length | 339 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639779900 |
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| Product | LacI family transcription regulator |
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| Protein accession | YP_926443 |
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| Protein GI | 119773703 |
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| COG category | [K] Transcription |
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| COG ID | [COG1609] Transcriptional regulators |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.344337 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGGCAA AAACAACCAA GAAAAACGTG ACTGTGATTG ATGTGGCCAA GGCCGCAGGC
GTCTCCAAAT CTACCGTGTC GCTGGTGCTG CAGGGCAGTG ACAAGGTTAA TCCCGCTACC
CGCGACAAGG TGCAGGCGGC CATGGCCGAA CTGGGTTATG TATACAACCG GGAGGCAGCA
TCGCTCAGAG GCAAGCGCTC CAATCTGGTG GCGATTGTCA TCAACGACCT GACCAACCCC
TACTCAGCGC AGCTAGCAGT CGGGCTTGAG GCCAATATCC GTCGTATGGG ACTTTTCTCT
ATGGTGGTTA ACTCAGGTGA AGACAAAGAC ACCCAAGGCC AGTTGGTGCA GAGTCTCAAA
GAATACAACG TGGCTGCCTT TGTGATCTGT CCTGCCCCCG GTACAGATGC TGACTGGGTG
AATCAGCTCG CGGCCACGGT GCCCGTAATC CATATAATGC GTGAGATAAC GGGGGCCAAG
GTGCCTACAG TGCTGCCCGA TAACCAGGCC GGTACGCTGG CCTCGACCCG CCATTTGCTG
AGTCAGGGTT ATACCCGCAT CGGATTTTTC GGCGGTAATC AGCGTATCTC AGATTACGGC
GAGCGTTTGG CAGGCTTTAA GGCGGCGCTG GCAGAAGCAG GGCTTGAGCC TGCAGGAGTG
TGGGAGACGG CGCTCACCAA TCGCCATGGT GGCCGCCTTG CCATGGCTGA GCTGCTCGCC
TCATCAACGC GGCCTGAGGC GCTGGTGTGC TTTACCGATA TTGTGGCCTA CGGTGCCATA
GAGCAATTAA GACAACAGGG CCTGATGCCT GGCAAAGACA TGGCGATAGT CGGATTTGAC
GATTTGGAAG ACTCCAAGCT GATGACGCCG GCGCTGAGCA GTATCGCCAT TGATGCCGAT
GCCCTCGGTG CGACGGTATG CCAGGTGTTG GAAGACATCC GCAGCGGTCA GCAGATGCAG
GGATTGCAGC GACTTCCTGT GCAACTGAAA GCCAGAGGTT CCAGTCTGCG CGCGTGTTAG
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| Protein sequence | MQAKTTKKNV TVIDVAKAAG VSKSTVSLVL QGSDKVNPAT RDKVQAAMAE LGYVYNREAA
SLRGKRSNLV AIVINDLTNP YSAQLAVGLE ANIRRMGLFS MVVNSGEDKD TQGQLVQSLK
EYNVAAFVIC PAPGTDADWV NQLAATVPVI HIMREITGAK VPTVLPDNQA GTLASTRHLL
SQGYTRIGFF GGNQRISDYG ERLAGFKAAL AEAGLEPAGV WETALTNRHG GRLAMAELLA
SSTRPEALVC FTDIVAYGAI EQLRQQGLMP GKDMAIVGFD DLEDSKLMTP ALSSIAIDAD
ALGATVCQVL EDIRSGQQMQ GLQRLPVQLK ARGSSLRAC
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