| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0564 |
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| Symbol | |
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| ID | 4602817 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 701524 |
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| End bp | 703878 |
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| Gene Length | 2355 bp |
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| Protein Length | 784 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639779899 |
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| Product | alpha-1,2-mannosidase family protein |
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| Protein accession | YP_926442 |
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| Protein GI | 119773702 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3537] Putative alpha-1,2-mannosidase |
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| TIGRFAM ID | [TIGR01180] alpha-1,2-mannosidase, putative |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.288531 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.252939 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGAATGT TAACAAAATG GTCGCTGCTG ACCTGTGTGC TGCTGGGCAG CCTTCAGCTG
CATGCCGAAG ATCTCACTCA ATGGGTTGAC CCTTTCATCG GCACAGGCGG CGATGGCCAT
ACCTTTCCCG GTGCCGTTGT GCCCTTCGGC ATGGTGCAGT TAAGCCCCGA TACCGACAAT
CCCATGCGTG GCGTATCGCC TCAAAGCGAA ATCTACAAGC GCTGCGCCGG TTACCACTAT
GACGACAGCA CCATAGTTGG CTTCTCCCAC ACGCATTTCA GCGGCACAGG CCACTCGGAT
CTGGGCGATC TCTTGATTAT GCCGATGACA GGCACTCCCC ACACAGAGCC AGGCACGGCG
ACAGATCCAG ACAGTGGCTA TCGCTCCCGT TTCAGCCACG ACGATGAAGA AGCCTCACCC
GGCTACTACC GGGTTAAACT CACCGATTAT CAAATCGATG CCGAACTCAC CACTACCGCT
CGCACCGGCA TGCACAGGTA CAGCTTCCCC GAAACCCATC AGGGCCATGT ACTGATTGAT
TTGACCCACG GCATCTACAA CTTTGCCAAT AAGGTGATTT GGAGCGATGT GCGGGTGGTG
GACGACAGCA CCCTTATCAC CTCGCGTCGC TCCAACGGCT GGGCGCACGA GCGGCCCATG
TACTTCGCCA TCCGTTTCTC CCGCCCTTTC GACGACATTG AACTTATCAA CGAAGACAAC
GCCCGCTACC GCTGCATGGG CTGTCTCGAC AAGAAAGATG GCAAGCACTC CACCATAGTC
AACAGCCGCA TCCCTTTTAC TGCGGGTAAG GCGGTGAAGG TGCTGGCTCG ATTCGATAAC
CCCCATCAGG CGCCGCTTTT GGTAAAAGTG GGCATATCAG CAGTGGATAA GAGTAATGCG
CTGGATAACT TAACCAGCGA GCTGCCCCAC TGGGATTTTG ACAAGGTACG CAGCGACGCC
AACGCCGCCT GGCAGACCGA GCTTGAACGG ATGGAAGCCA AGGGCGACCA GTCGCAAAAG
CGCCAGTTCT ATACCGCGTT CTACCACGCG CTGCAGGCAC CGAGTCTGTA TCAGGACGTC
AATGGCGAGT ACCTCGGTGT AGATGGTGAA ATCCATAAGG CCGACTTTCC CCACTACAGC
CTTTTTTCAC TGTGGGATAC CTACCGCGCC CTGCATCCGC TGCTGACTCT GGTGTCCCCC
GAGCGGGTGC CGGACATGAT TAACTCCATG CTGGCCCATT ATGACCAGAG CTATGACCGT
ATCCTGCCGA TATGGTCTTT TCAGGGCCAC GAGACCTGGA CCATGATTGG CTACCATGCT
GTCTCTGTTA TCAGCGACGC CTGGCAAAAG GGTATTCGCG GCTTTGATGG AGAGCGGGCG
CTGGATGCCA TGACCGCCAC CGCCAACCAC CCCAACTACG ATGCCATCCC TGAGTATCTT
AAATACGGCT ATGTGCCCAT GGATGTGCTG CCCGAGTCAG TGTCCATCAC CCTGGAATAC
GCCTACGATG ACTTTGCCAT CGCCCGCATG GCACAGAGCA TGGGCGAAAC AGACATCGCC
AAAGCCTTCG ACAAGCGCGC CCAGAGCTGG CGTAACGTGT TTGATCCCGA AACCAAATTT
GCCCGCGGCC GCGACAGCAA AGGCCACTGG GACAAAGACT TCGACGTGGA AGAAGCCAAG
TACATGGGCC CCTTTACCGA GGGCAACAGC TTCCAGTACA GCTTCTATGT ACCCCACGAT
GTGGCGGGGC TTATCGATAT CAAGGGGGGC GACGGCGCCT TTATCGAGCG TTTGGATGAG
CTTTTTACCC GTCCGCTCCA TGCCGACAAA ATCAAGGAAC ATGAGGATAT CGCCGGTTTG
ATTGGCCAGT ACGCCCACGG CAACGAGCCA AGCCACCACA TTGCTTATCT ATACAACCAC
GCCGGCGCCC CCTGGATGAC CCAGGCACGT ATCCGCCAAA TCATGGATAC CCTGTCAAAT
GACACGCCAT CGGGCCTCGC CGGTAACGAC GATGTGGGTC AGATGTCGGC CTGGTATCTG
TTCTCAGCCA TGGGCTTTTA CCCGGTGACG CCGGGGGATA TGACCTACGT GATTGGCGCG
CCGCAGCTGC CTGAGGTGAC TCTCAATCTC AGTAACGGCA AGCACTTTAA GGTTATCGCC
AAGGGGCTGT CCAAGGACAA GCTGTACATT GCCAGCGTCA GTCTGAATGG CAAGCCGCTA
AATCGAAGCT ATCTGCACCA CGATGACATC ATGGCCGGTG GCGAGCTGGT GTTTGAGATG
GCAGCTACGC CGAACAAAGC CTGGGGCATG GCAATTGATA CCCGCCCCAA GGCCATGAGC
CCTTACAAAA ACTAA
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| Protein sequence | MGMLTKWSLL TCVLLGSLQL HAEDLTQWVD PFIGTGGDGH TFPGAVVPFG MVQLSPDTDN
PMRGVSPQSE IYKRCAGYHY DDSTIVGFSH THFSGTGHSD LGDLLIMPMT GTPHTEPGTA
TDPDSGYRSR FSHDDEEASP GYYRVKLTDY QIDAELTTTA RTGMHRYSFP ETHQGHVLID
LTHGIYNFAN KVIWSDVRVV DDSTLITSRR SNGWAHERPM YFAIRFSRPF DDIELINEDN
ARYRCMGCLD KKDGKHSTIV NSRIPFTAGK AVKVLARFDN PHQAPLLVKV GISAVDKSNA
LDNLTSELPH WDFDKVRSDA NAAWQTELER MEAKGDQSQK RQFYTAFYHA LQAPSLYQDV
NGEYLGVDGE IHKADFPHYS LFSLWDTYRA LHPLLTLVSP ERVPDMINSM LAHYDQSYDR
ILPIWSFQGH ETWTMIGYHA VSVISDAWQK GIRGFDGERA LDAMTATANH PNYDAIPEYL
KYGYVPMDVL PESVSITLEY AYDDFAIARM AQSMGETDIA KAFDKRAQSW RNVFDPETKF
ARGRDSKGHW DKDFDVEEAK YMGPFTEGNS FQYSFYVPHD VAGLIDIKGG DGAFIERLDE
LFTRPLHADK IKEHEDIAGL IGQYAHGNEP SHHIAYLYNH AGAPWMTQAR IRQIMDTLSN
DTPSGLAGND DVGQMSAWYL FSAMGFYPVT PGDMTYVIGA PQLPEVTLNL SNGKHFKVIA
KGLSKDKLYI ASVSLNGKPL NRSYLHHDDI MAGGELVFEM AATPNKAWGM AIDTRPKAMS
PYKN
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