| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0562 |
|---|
| Symbol | |
|---|
| ID | 4602815 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 697684 |
|---|
| End bp | 698925 |
|---|
| Gene Length | 1242 bp |
|---|
| Protein Length | 413 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639779897 |
|---|
| Product | glucose/galactose transporter |
|---|
| Protein accession | YP_926440 |
|---|
| Protein GI | 119773700 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0738] Fucose permease |
|---|
| TIGRFAM ID | [TIGR01272] glucose/galactose transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.336996 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCTTCG TTTCATCCAC CACCCCACAA AACGGCAGCG CTGCACCAGC CCAAAGCCAC
CAGCAGTTGC TGTTTGGCGC CATGACCAGT TTGTTTTTCA TCTGGGGCTT TATCACCGCG
CTGAACGACA TTCTTATTCC GCACCTCAAG GGTATATTTG ACCTTAGTTA CACCCAAGCC
ATGTTGGTGC AGTTCTGCTT CTTCGGAGCC TACTTTCTGG TATCACCACT GGCCGGTGTC
CTCATCGCCC GCATCGGCTA CCTGCGGGGC ATCATCTTTG GCCTGAGCAC CATGGCCACC
GGCTGCCTGC TGTTTTACCC GGCGTCCAGC CTGGAACAGT ATGCGCTGTT CCTGCTGGCG
CTGTTTGTGC TGGCCTCAGG CATTACCATA CTGCAGGTAT CGGCTAACCC TTTTGTTGCG
CGCCTCGGGC CCGAGCGCAC TGCCGCCAGT CGTCTGAATC TGGCCCAGGC CCTCAACTCC
CTCGGCCATA CTCTGGGGCC ACTCTTCGGC AGCCTGCTGA TTTTCGGCGC GGCCGCCGGT
ACCCATGAAG CGGTGCAGTT ACCCTATCTG CTGCTGGCCG CTGTGATTGG CATCATTGCG
GTGGGCTTTA TTTTCCTCGG CGGCAAGGTC AAACACGCCG ACATGGGGGT AGACCATCGC
CATAAAGGTT CGCTGCTCAG TCATAAACGC CTGCTCTTGG GCGCACTGGC GATATTCCTT
TACGTTGGCG CCGAGGTATC TATTGGCAGC TTTTTGGTGA ACTACTTTGC CGAGCCCAGC
ATTGGCGGTT TGGATGAGAA GAGTGCTGCA GAGCTGGTGT CCTGGTATTG GGGCGGCGCC
ATGATAGGCC GCTTCGCCGG TGCAGCCCTC ACCCGCCGCT TTAATCCCGC GATGGTGCTG
GCGGCCAATG CGGTGTTTGC CAACCTGCTG CTGATGCTCA CCATAGTGTC CAGCGGTGAG
CTGGCCTTGG TGGCCGTGTT GGCGGTGGGC TTTTTCAACT CCATCATGTT CCCCACCATC
TTCACCCTGG CCATTGAAGG CCTGGGCGAG CTGACCAGTC GTGGTTCCGG GCTTCTGTGT
CAGGCGATTG TGGGCGGCGC CCTACTGCCG GTTATTCAGG GCGTTGTAGC CGATAACGTG
GGTGTTCAGC TGAGCTTTAT CGTGCCAACC TTTTGTTATT TTTATATTTG TTGGTATGCC
TTTTTTGCCC GTAACCGGAT GAATGGAGAA ACTGCGTCAT GA
|
|---|
| Protein sequence | MAFVSSTTPQ NGSAAPAQSH QQLLFGAMTS LFFIWGFITA LNDILIPHLK GIFDLSYTQA
MLVQFCFFGA YFLVSPLAGV LIARIGYLRG IIFGLSTMAT GCLLFYPASS LEQYALFLLA
LFVLASGITI LQVSANPFVA RLGPERTAAS RLNLAQALNS LGHTLGPLFG SLLIFGAAAG
THEAVQLPYL LLAAVIGIIA VGFIFLGGKV KHADMGVDHR HKGSLLSHKR LLLGALAIFL
YVGAEVSIGS FLVNYFAEPS IGGLDEKSAA ELVSWYWGGA MIGRFAGAAL TRRFNPAMVL
AANAVFANLL LMLTIVSSGE LALVAVLAVG FFNSIMFPTI FTLAIEGLGE LTSRGSGLLC
QAIVGGALLP VIQGVVADNV GVQLSFIVPT FCYFYICWYA FFARNRMNGE TAS
|
|---|
| |