| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0544 |
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| Symbol | |
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| ID | 4602799 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 669483 |
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| End bp | 670568 |
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| Gene Length | 1086 bp |
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| Protein Length | 361 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 639779880 |
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| Product | outer membrane porin, putative |
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| Protein accession | YP_926424 |
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| Protein GI | 119773684 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000269892 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0120764 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAAGA CCCTTATCTC TGCATCTGTA GCATCGGTAA TGGCCCTGGC ATCATTCGGC
GCACTGGCCG AAGGTCCTCA GTTCTATGGC CGTCTTGATT TGTCAGTCAC CAACACCGAC
GTAGGTACCA CTGTGCAGTC TGGCACTAAA GGTATCAACA CCAATGATTT TGCCAACGAG
AACAACTCAG GCACCTACAT CGAAAACAAC TTCTCCTGGT TGGGTGTAAA AGGTACTGAG
AACATCAGCT CTGGTATCGA TATCGTTTAC CAAATGGAGT TCCAGGTAGA GAACACCTCT
GGTTCAGGTG ATACATTCAA GCCACGTAAC ACTTATCTGG GTATCAAAAC CAGCGCAGGT
ACCGTACTGG TAGGCCGCAA CGACACAGTA TTCAAGCAGT CTGAAGGCGG CGTGGACCTG
TTCGGTAACA CCAACGCGGA TATCGACCGT TTGGTTGCAG CACAAACCCG CAGCGCCGAC
GGTATCTGGT ACTACTCTCC AGTGATCGCT GACCTGGTAA CCCTGAATGC CACCTACCTG
ATGGAAGACA ACAATGGCAG CGACGACGCT CAGTATGCGT TGTCTGTTAC CGTCGGTGAC
AAGGGCCTGA AGAAGCACAA CTTCTACCTT GCCGGTGCCT ACAACAAGGG CATCAGCAAC
GTCGATGCAT ACCGCGCAGT TGCTCAGGTA AAACTGGGTG ATTTCAAGGT AGGCGGTCTG
TTCCAGAACA CCGAGAAAGT GGACAGCGGC AACGACAACA ACACTTACTT TGTCAACGTG
GCTTACAACC TGAACGGTGT AAACCTGAAA GCCGAATATG GCTACGATGA AAGTGGCATG
GGCAAGTACT ATGGTAACGT TGTTAAGTAC ACCGAAGTAG TTGACGGTAA AGTCGTAAAC
AAGACACTGT CTGGTTCTGA CATCGAAGTC ACCAACATTA CTCTGGGTGC CGACTACCGC
GCAGCCAAGT CTACCCTGTT GTTCGCTCAC TATGCCATGT ATGAAGGCAG CCACGTAACC
GCTGGCCAGC GTGTTGACCT GCAAGACGAC AACGTGTTCA CCGTGGGTGT ACGTTACGAC
TTCTAA
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| Protein sequence | MKKTLISASV ASVMALASFG ALAEGPQFYG RLDLSVTNTD VGTTVQSGTK GINTNDFANE
NNSGTYIENN FSWLGVKGTE NISSGIDIVY QMEFQVENTS GSGDTFKPRN TYLGIKTSAG
TVLVGRNDTV FKQSEGGVDL FGNTNADIDR LVAAQTRSAD GIWYYSPVIA DLVTLNATYL
MEDNNGSDDA QYALSVTVGD KGLKKHNFYL AGAYNKGISN VDAYRAVAQV KLGDFKVGGL
FQNTEKVDSG NDNNTYFVNV AYNLNGVNLK AEYGYDESGM GKYYGNVVKY TEVVDGKVVN
KTLSGSDIEV TNITLGADYR AAKSTLLFAH YAMYEGSHVT AGQRVDLQDD NVFTVGVRYD
F
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