| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0533 |
|---|
| Symbol | |
|---|
| ID | 4602788 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 657261 |
|---|
| End bp | 658262 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 639779869 |
|---|
| Product | alcohol dehydrogenase, zinc-containing |
|---|
| Protein accession | YP_926413 |
|---|
| Protein GI | 119773673 |
|---|
| COG category | [C] Energy production and conversion
[R] General function prediction only |
|---|
| COG ID | [COG0604] NADPH:quinone reductase and related Zn-dependent oxidoreductases |
|---|
| TIGRFAM ID | [TIGR02824] putative NAD(P)H quinone oxidoreductase, PIG3 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0360473 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTTCAT TCCACACTCA GGTTGTGTTT GATGCCCCCG GTAGCCCCGA GGTTATGAAA
CTGGTGCAAG GGCCAGCGCC TTCCCCCCAA GTTGGAGAGG TGTTGATTAG GGTAGCCGCC
GCCGGCGTTA ACGGGCCGGA TTTGGCGCAG CGCAAAGGTG CTTATCCACC GCCGCCGGGC
GCTTCACCAA TTTTGGGCTT GGAAGTGTCC GGCGAGGTGG TTGAGGTTGC CCCCGATGTC
AGCTGGCCAA GGATAGGTGA CAAGGTCTGC GCCCTGGTGC CCGGCGGTGG TTATGCCGGC
TTGGTGGTGA CCCCTGCGCT GCACTGTTTG CCCATACCGT TAACTATGTC CCTCGAAGAG
GCCGCGGGCC TGCCTGAAAC CTTCTTTACC GTGTGGGGCA ATCTCTTTAT GCGCGCTGGC
CTCAAGGCGG GCGAGACCCT GCTTATCCAG GGTGGCAGCG GTGGCATAGG CTCCACGGCG
ATTCTGCTGG CCAGGGCGTT TGGCGCGCGG GTACTGGTGA CCTCCGGCAG TGCAGAAAAA
CGGGAATATT GCGTGAGTCT GGGGGCTGAC ATGGCCTTTG ACTATCGGGA TGAGGCGCTG
GTTGACCGGG TGCTTGCGGC CACAGACGGC CGGGGTGTGG ATGTCGTGCT GGACATGGCA
GGTGGTGCCA TGGTCAATAA CAATCTGAAA ATGCTCGCCA ATGATGGCCG TATGGTCTCC
GTGGCCATGC AGGCAGGTCC CAGGGCCGAG GTGGATGTGT TTCGCATCAT GAGTAAACGC
ATCCTGTGGA CGGGCTCCAC TTTAAGACCC CAGAGTATCG AGGCCAAAGC GGCCATCGCC
AAAGAACTGA GGGAGAAGGT TTGGCCGCTG CTCGACAGCG GCCAATGCCG TATACCTCTT
TTTGGCGTGT ATCGGCTCGA TGAAGTGGTT AAAGTCCACA GCATCATGGA GGCAAAATCC
CACCACGGAA AGCTGGTGCT CAGTCTCGAT GGAATTGCTT GA
|
|---|
| Protein sequence | MTSFHTQVVF DAPGSPEVMK LVQGPAPSPQ VGEVLIRVAA AGVNGPDLAQ RKGAYPPPPG
ASPILGLEVS GEVVEVAPDV SWPRIGDKVC ALVPGGGYAG LVVTPALHCL PIPLTMSLEE
AAGLPETFFT VWGNLFMRAG LKAGETLLIQ GGSGGIGSTA ILLARAFGAR VLVTSGSAEK
REYCVSLGAD MAFDYRDEAL VDRVLAATDG RGVDVVLDMA GGAMVNNNLK MLANDGRMVS
VAMQAGPRAE VDVFRIMSKR ILWTGSTLRP QSIEAKAAIA KELREKVWPL LDSGQCRIPL
FGVYRLDEVV KVHSIMEAKS HHGKLVLSLD GIA
|
|---|
| |