| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0528 |
|---|
| Symbol | |
|---|
| ID | 4602783 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 651752 |
|---|
| End bp | 652366 |
|---|
| Gene Length | 615 bp |
|---|
| Protein Length | 204 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 639779864 |
|---|
| Product | cytochrome c family protein |
|---|
| Protein accession | YP_926408 |
|---|
| Protein GI | 119773668 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2863] Cytochrome c553 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000129168 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.22493 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATCCA AACTAATCGG GGCTCTTGGC CTTTGGCTGA TAGCCACCCA TGGTGCCCAG
GCGACAACGG CACCCGCCAT GCCACCACAG GCAGCACTTT GCGGCAGTTG CCACGGCTCC
CAGGGCCTGG GAGTAGAACC GCTGGGACCG CGTCTGGCGG GATTGTCTAG CGAGTATATT
CAAAAGCAAA TCAAAGATTT TCAATCTTCA AAGCGGCAAA ACCCCACCAT GAGGCCCATG
GCCATGACGC TGCAGGGCGA TGCCTTGATA GCCCAGGTCG CGGACTATTT TGCGGCGCAA
GCCGTACCCA GCGTCAGCAT TCAGCGCCGC GGTGAGGAAG TGACATTCCA GGATAGCGCA
GAGCGACTTG CCTACCAGGG AGATTGGTCC CGTGAGCTAC CGGCCTGTGT CACCTGCCAT
GGCCCATCGG GCATCGGCGC TGGCACCTTC CCCCGTCTTG CCGGACAACA AGCCAGCTAC
CTCAAGAGTC AGCTACTGGC ATGGCAGTCA GGAACGCGTC AGGGTGACAG TGACGGCATG
ATGGCCAATG TTGCCAATAA GCTCTCGGCG GCGGAAATTG ACGCCATAGC CCACTATTTT
GCCAACCTGA AGTAA
|
|---|
| Protein sequence | MTSKLIGALG LWLIATHGAQ ATTAPAMPPQ AALCGSCHGS QGLGVEPLGP RLAGLSSEYI
QKQIKDFQSS KRQNPTMRPM AMTLQGDALI AQVADYFAAQ AVPSVSIQRR GEEVTFQDSA
ERLAYQGDWS RELPACVTCH GPSGIGAGTF PRLAGQQASY LKSQLLAWQS GTRQGDSDGM
MANVANKLSA AEIDAIAHYF ANLK
|
|---|
| |