| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0520 |
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| Symbol | |
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| ID | 4602775 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 639484 |
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| End bp | 640431 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639779856 |
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| Product | putative polyhydroxyalkanoate depolymerase |
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| Protein accession | YP_926400 |
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| Protein GI | 119773660 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3509] Poly(3-hydroxybutyrate) depolymerase |
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| TIGRFAM ID | [TIGR01840] esterase, PHB depolymerase family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.213794 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCAAAG TCTCTTCGTT GGCGCTCAAG GCTGCGACCA TTTTAGCAAG TAGCCTGTCA
CTCACTGTTG CCGCCCATGC TTCAGCACGG GCCTTCGAGC CGGTTAACGA CTTTGGTGCC
AATCCCGGAG CATTAACGGC GTCAATCTAC ACGCCTGCAA CCAACCCCGG CAGTGCTCTG
GTGGTGCTGC TTCACGGCTG CGTGCAGGAT GGTATCGAGC TTGCCGATAA CAGCGGGTTA
ACTGGCCTTG CCCAAGAGAA GCAATTTGCC GTGCTTGTGC CTCAGCAGAG TTTTGATAAT
AACGTAAAAC GCTGTTTTAA CTGGTTTTCA GCTCAGGATA CCCAGGTTGA CAGCGGCGAA
ATGCTATCGC TTAAAAACAT GATTACTCAG GCACAGGCCA CTACTGGCGC CAAACGTGTG
TATCTGGTGG GCCTATCTGC CGGCGGCGCA ATGGCCAGTG CGGCACTTGT TAATTATCCC
GACTTTTTCA CTGCCGGTGC TGTGATAGCA GGTCTGCCTT ATCCCTGTGC CGATAACCTG
ACCAAAGCCA TTTCCTGTAT GAAAAAAGGG CCGGCGGAAT CCACAGGGGA ACTTGTGAGC
TTTGTGCGCA AGTTACATCC AGATCAAGCC TCCTGGCCGA CACTCAGCAT CTGGACAGGC
ACAACAGATG CGGTGGTGCA CCCACAGAAT GCCCGGAGTT TGGCGGCGCA GTGGCTGCAG
TTATCCGGTG TAGAGGCAGC ACCCAAGGTT GAAGAATTTA CCGATTATCG GATCAGTCGC
TGGACCGATA CCAAGGGGCA GCCCTTAGTG GATTTGGTGG AGATTAATAA CATGGGCCAT
GGTATTTCGG TGAATCCGGC AATAACTAAT GGCGGAAAAG AGGGGGACTT TTTATTGAAG
GCCCCAATCA GCAGCATGGA TGAAATTATT CGGTCTTGGG GATTATAG
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| Protein sequence | MFKVSSLALK AATILASSLS LTVAAHASAR AFEPVNDFGA NPGALTASIY TPATNPGSAL
VVLLHGCVQD GIELADNSGL TGLAQEKQFA VLVPQQSFDN NVKRCFNWFS AQDTQVDSGE
MLSLKNMITQ AQATTGAKRV YLVGLSAGGA MASAALVNYP DFFTAGAVIA GLPYPCADNL
TKAISCMKKG PAESTGELVS FVRKLHPDQA SWPTLSIWTG TTDAVVHPQN ARSLAAQWLQ
LSGVEAAPKV EEFTDYRISR WTDTKGQPLV DLVEINNMGH GISVNPAITN GGKEGDFLLK
APISSMDEII RSWGL
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