| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0519 |
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| Symbol | |
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| ID | 4602774 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 638675 |
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| End bp | 639340 |
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| Gene Length | 666 bp |
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| Protein Length | 221 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639779855 |
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| Product | 3-oxoacid CoA-transferase |
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| Protein accession | YP_926399 |
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| Protein GI | 119773659 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG2057] Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit |
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| TIGRFAM ID | [TIGR02428] 3-oxoacid CoA-transferase, B subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.216025 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCACTTT CCAGAGAACA ACTCGCCCAG CGTGTCGCAC AGGAACTCAA GGACGGCTAT
TACGTCAACC TCGGCATAGG CATTCCCACC CTGGTGGCTA ACTACATTCC CGAGGGGATA
GAAGTCATGC TGCAGTCGGA AAACGGCTTG CTGGGCATGG GACCTTTCCC CACTGAGGAT
GAAGTCGACC CCGACCTTAT CAATGCGGGC AAGCAAACCG TGACCATGGC GACCGGTGCG
GCCCTGTTTG ACTCCGCCGA GTCATTCGCC ATGATCCGTG GCGGCCATGT GGACTTAACC
GTGCTCGGCG CCTTCGAAGT GGATACCCAG GGCAATATCG CCTCCTACAT GATCCCGGGG
AAACTCATCA AGGGGATGGG CGGTGCCATG GATTTGGTGG CGGGCGCCGA TAACATCATA
GTGACCATGA CCCACGCCTC GAAACAGGGT GAATCCAAGC TGCTTACCCA ATGCAGCCTG
CCGCTGACCG GTAAAGGCTG TATCAAGAAG GTGCTAACCG ATCTTGCCTT TATCGAAATC
AAAGACGGGA AATTCCATCT GCTTGAGCGG GCCCCCGGTG TGAGTGTGGA AGAGATTATC
AAGCTGACCG CCGGAGAACT GGTGGTGCCT GAGCATGTGC CTGAGATGTG CTTTCAGAGC
GCGTAA
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| Protein sequence | MALSREQLAQ RVAQELKDGY YVNLGIGIPT LVANYIPEGI EVMLQSENGL LGMGPFPTED
EVDPDLINAG KQTVTMATGA ALFDSAESFA MIRGGHVDLT VLGAFEVDTQ GNIASYMIPG
KLIKGMGGAM DLVAGADNII VTMTHASKQG ESKLLTQCSL PLTGKGCIKK VLTDLAFIEI
KDGKFHLLER APGVSVEEII KLTAGELVVP EHVPEMCFQS A
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